goby | Goby framework and tools for analysis of high-throughput | Genomics library

by CampagneLaboratory Java Version: 2.3.2 License: Non-SPDX

X-Ray Key Features Code Snippets Community Discussions(4)Vulnerabilities Install Support

kandi X-RAY | goby Summary

goby is a Java library typically used in Artificial Intelligence, Genomics applications. goby has no bugs, it has no vulnerabilities and it has low support. However goby build file is not available and it has a Non-SPDX License. You can download it from GitHub.

Goby is a next-gen data management framework designed to facilitate the implementation of efficient data analysis pipelines. The program is distributed under the GNU General Public License (GPL).

Support

Quality

Security

License

Reuse

Support

goby has a low active ecosystem.

It has 17 star(s) with 2 fork(s). There are 6 watchers for this library.

It had no major release in the last 12 months.

There are 2 open issues and 4 have been closed. On average issues are closed in 34 days. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of goby is 2.3.2

Quality

goby has no bugs reported.

Security

goby has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

License

goby has a Non-SPDX License.

Non-SPDX licenses can be open source with a non SPDX compliant license, or non open source licenses, and you need to review them closely before use.

Reuse

goby releases are available to install and integrate.

goby has no build file. You will be need to create the build yourself to build the component from source.

Installation instructions are not available. Examples and code snippets are available.

Top functions reviewed by kandi - BETA

kandi has reviewed goby and discovered the below as its top functions. This is intended to give you an instant insight into goby implemented functionality, and help decide if they suit your requirements.

Sort and sort the memory
Merge multiple splits
Sort a split
Writes the content of the alignment reader to the given writer
Run the analysis
Writes the data to a file
Scans the genome for a given strand
Update the Cp Xs in the VCF
Performs heptamers
Main execution method
Writes a record to the writer
Redraw the input files
Defines the columns for the VCF generation
Perform the average RPKM
Main entry point
Write the counts from the input file
Invoked by the genome model
Execute the estimation
Perform the actual analysis
Runs the analysis mode
Writes the record for each sample
Executes the main thread
Perform the concatenation
The main method
Writes a record
Define the columns

Get all kandi verified functions for this library.

goby Key Features

No Key Features are available at this moment for goby.

goby Examples and Code Snippets

No Code Snippets are available at this moment for goby.

Community Discussions

Trending Discussions on goby

Row names column can't be removed in R

Automating a ggplot for each level in a group

Automatically make time series plots for each level in a group

Projectiles Image Error Problem How To FIx?

QUESTION

Row names column can't be removed in R

Asked 2022-Jan-26 at 22:05

I have a function that transforms a dataframe's structure (making each value for "year_season" factor as its own column) for each value in a list (a list of species names) and reorders the 1st column values (the location or "site") to be in order (low to high). I then tell it to save the dataframe as a matrix and print each matrix as a csv. For some reason though, the function is making a another column out of the rownames and I can't remove it.

data = "dat":

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ANSWER

Answered 2022-Jan-26 at 22:05

That's the default functionality of write.table and write.csv. Add row.names=FALSE. From ?write.csv:

Source https://stackoverflow.com/questions/70870804

QUESTION

Automating a ggplot for each level in a group

Asked 2021-Sep-08 at 16:13

My data is comprised of a column of fish counts with the corresponding when and where of each catch.

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ANSWER

Answered 2021-Sep-08 at 16:13

Here is your program code after repair !! However, without posting the data.

Source https://stackoverflow.com/questions/69076287

QUESTION

Automatically make time series plots for each level in a group

Asked 2021-Sep-07 at 19:04

My original question can be seen here (Automating a ggplot for each level in a group), but I thought I'd ask it differently to leave it open for many different ways to answer this question rather than a "how to" question to fix my poor attempt.

I'd like to make the process of creating a time series plot like the one below quicker/automatic (i.e., doesn't require the user to enter one species name at a time). Perhaps with an "if" loop. Something that tells R to cycle through all the unique common names in the data and print (or save to png) a plot using the code below (with the "common_name" of each species as the title of their respective plot). If there isn't enough data for a plot, R should print a message: "Not enough data for a plot", or something.

Here is a sample of my data (as you can see, there are over 100 species to make a plot of). This data sample shows only 3 species, 5 sites out of 47, and 3 years out of 16 years worth of data.

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ANSWER

Answered 2021-Sep-07 at 18:58

You can nest the data frame to species groups and then use the mutate and map combo to create a plot for each species group. Then you can use deframe to turn the name and value columns into a named list:

Source https://stackoverflow.com/questions/69092982

QUESTION

Projectiles Image Error Problem How To FIx?

Asked 2020-May-20 at 19:20

so I am trying to make my projectile into images instead of circles but I am getting this error

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ANSWER

Answered 2020-May-20 at 19:20

The constructor of projectile has the arguments x, y and color

Source https://stackoverflow.com/questions/61921134

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install goby

You can download it from GitHub.
You can use goby like any standard Java library. Please include the the jar files in your classpath. You can also use any IDE and you can run and debug the goby component as you would do with any other Java program. Best practice is to use a build tool that supports dependency management such as Maven or Gradle. For Maven installation, please refer maven.apache.org. For Gradle installation, please refer gradle.org .