SciGraph | A Neo4j backed ontology store | Genomics library

 by   SciGraph Java Version: Release-1.5 License: Apache-2.0

X-RayKey FeaturesCode SnippetsCommunity Discussions(3)VulnerabilitiesInstallSupport

kandi X-RAY | SciGraph Summary

kandi X-RAY | SciGraph Summary

SciGraph is a Java library typically used in Artificial Intelligence, Genomics, Neo4j applications. SciGraph has no bugs, it has no vulnerabilities, it has build file available, it has a Permissive License and it has low support. You can download it from GitHub.

Represent ontologies and ontology-encoded knowledge in a Neo4j graph.
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            kandi-support Support

              SciGraph has a low active ecosystem.
              It has 179 star(s) with 44 fork(s). There are 34 watchers for this library.
              OutlinedDot
              It had no major release in the last 12 months.
              There are 80 open issues and 178 have been closed. On average issues are closed in 466 days. There are 6 open pull requests and 0 closed requests.
              It has a neutral sentiment in the developer community.
              The latest version of SciGraph is Release-1.5

            kandi-Quality Quality

              SciGraph has 0 bugs and 0 code smells.

            kandi-Security Security

              SciGraph has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.
              SciGraph code analysis shows 0 unresolved vulnerabilities.
              There are 0 security hotspots that need review.

            kandi-License License

              SciGraph is licensed under the Apache-2.0 License. This license is Permissive.
              Permissive licenses have the least restrictions, and you can use them in most projects.

            kandi-Reuse Reuse

              SciGraph releases are available to install and integrate.
              Build file is available. You can build the component from source.
              Installation instructions, examples and code snippets are available.
              SciGraph saves you 9064 person hours of effort in developing the same functionality from scratch.
              It has 18545 lines of code, 1366 functions and 290 files.
              It has medium code complexity. Code complexity directly impacts maintainability of the code.

            Top functions reviewed by kandi - BETA

            kandi has reviewed SciGraph and discovered the below as its top functions. This is intended to give you an instant insight into SciGraph implemented functionality, and help decide if they suit your requirements.
            • Processes the given axioms in the ontology
            • Visit an intersection - of - object
            • Visit an annotation assertion
            • Visit a declaration
            • Visit the ontology and create a new one
            • Visit a single property assertion
            • Handles ontology properties
            • Visit an axiom
            • This method is called when a sub - property chain is created
            • Processes any interesting values from the user
            • Visit all values from the OWL object
            • Visit an axifferentIndividuals
            • Visit a disjoint classes
            • Registers a named individual
            • Visit a Completable
            • Visit a class assertion
            • Creates or updates a UNION node
            • Visit a annotated annotation property
            • Visit a OWL SubObjectProperty
            • Transforms an axiom into a list of individuals
            • Extract entities from the given text
            • Gets concepts from a prefix query
            • Performs a search on the query
            • Main entry point for the reasoner
            • Returns the longest matching prefix of the input string
            • Binds all properties
            • Annotate a Text fragment of a text
            • Write the request to an output stream
            • Performs the actual processing
            • Executes a cypher query
            • Implements the core request
            Get all kandi verified functions for this library.

            SciGraph Key Features

            No Key Features are available at this moment for SciGraph.

            SciGraph Examples and Code Snippets

            No Code Snippets are available at this moment for SciGraph.

            Community Discussions

            Trending Discussions on SciGraph

            Docker Error: standard_init_linux.go:195: exec user process caused "exec format error"
            Package docker maven application and run it using a shell script
            Graph with multiple x and y axis using Matplotlib

            QUESTION

            Docker Error: standard_init_linux.go:195: exec user process caused "exec format error"
            Asked 2018-Aug-30 at 11:24

            I am trying to build docker image for scigraph, the image is getting built successfully but when I try to run I'm getting following error

            ...

            ANSWER

            Answered 2018-Aug-30 at 11:24

            Check what is the ENTRYPOINT by inspecting your image.

            If it is a standard sh -c, a CMD ./run.sh should be enough.
            But if it is not, ./run.sh might not be compatible with ENTRYPOINT command.

            Source https://stackoverflow.com/questions/49313818

            QUESTION

            Package docker maven application and run it using a shell script
            Asked 2018-Apr-07 at 00:34

            I am building Scigraph database on my local machine and trying to move this entire folder to docker and run it, when I run the shell script on my local machine it runs without error when I add the same folder inside docker and try to run it fails

            Am I doing this right way, here's my DOckerfile

            ...

            ANSWER

            Answered 2018-Apr-07 at 00:34

            For scigraph as provided in their ReadMe, you can to run mvn install before you run their services. You can set your shell to bash and use a docker compose to run the docker image as shown below

            Dockerfile

            Source https://stackoverflow.com/questions/49329834

            QUESTION

            Graph with multiple x and y axis using Matplotlib
            Asked 2017-Jun-23 at 09:49

            As I checked with the Matplotlib document and other resources. I got that when multiple axis were created they are not depend on each other and we can plot the multiple line as per different axis. But I need to plot the graph like two Y-axis contains with the temperature as (Celsius and Fahrenheit) and need to plot only one single line related to that so with 1st axis user able to check Celsius and with 2nd axis Fahrenheit. with x-axis as range (1 -24 hr).

            Suggestions are most welcome.

            ...

            ANSWER

            Answered 2017-Feb-28 at 14:06

            use twinx() to show two axes, and convert the y_limits of ax1 in Celsius to y_limits of ax2 in Fahrenheit:

            Source https://stackoverflow.com/questions/42506819

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install SciGraph

            [A Docker container is included with instructions](https://github.com/SciGraph/SciGraph/tree/master/docker/).
            [Get autocomplete candidates for a prefix](http://localhost:9000/scigraph/vocabulary/autocomplete/Sp)
            [Find a class based on an "exactish" term match](http://localhost:9000/scigraph/vocabulary/search/Shrimps)
            [Get the graph neighborhood of a class](http://localhost:9000/scigraph/graph/neighbors/pizza:PrawnsTopping)
            [Visualize the graph neighborhood of a class](http://localhost:9000/scigraph/graph/neighbors/pizza:AmericanHot.png)
            [Visualize a custom, domain specific Cypher query](http://localhost:9000/scigraph/dynamic/toppings.png?pizza_id=pizza:FourSeasons)

            Support

            [Overview of SciGraph in NIF and Monarch](https://github.com/SciGraph/SciGraph/raw/master/docs/presentation/20150801%20SciGraph.pptx).
            Find more information at:

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            CLONE
          • HTTPS

            https://github.com/SciGraph/SciGraph.git

          • CLI

            gh repo clone SciGraph/SciGraph

          • sshUrl

            git@github.com:SciGraph/SciGraph.git

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