forester | open source libraries of Java and Ruby software | Genomics library

 by   cmzmasek Java Version: Current License: No License

kandi X-RAY | forester Summary

kandi X-RAY | forester Summary

forester is a Java library typically used in Artificial Intelligence, Genomics applications. forester has no bugs, it has no vulnerabilities and it has low support. However forester build file is not available. You can download it from GitHub.

forester is a collection of open source libraries of Java and Ruby software for phylogenomics and evolutionary biology research

            kandi-support Support

              forester has a low active ecosystem.
              It has 31 star(s) with 15 fork(s). There are 7 watchers for this library.
              It had no major release in the last 6 months.
              There are 11 open issues and 9 have been closed. On average issues are closed in 110 days. There are 1 open pull requests and 0 closed requests.
              It has a neutral sentiment in the developer community.
              The latest version of forester is current.

            kandi-Quality Quality

              forester has no bugs reported.

            kandi-Security Security

              forester has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

            kandi-License License

              forester does not have a standard license declared.
              Check the repository for any license declaration and review the terms closely.
              Without a license, all rights are reserved, and you cannot use the library in your applications.

            kandi-Reuse Reuse

              forester releases are not available. You will need to build from source code and install.
              forester has no build file. You will be need to create the build yourself to build the component from source.

            Top functions reviewed by kandi - BETA

            kandi has reviewed forester and discovered the below as its top functions. This is intended to give you an instant insight into forester implemented functionality, and help decide if they suit your requirements.
            • Prints information about the program
            • Calculates the independent domain combination statistics
            • Calculate the genetic code
            • Writes a list of species and IDs to a writer
            • Test program
            • Execute analysis
            • Writes the orthologization groups
            • Print command line help
            • Parses the input file
            • Prints information about a program
            • Main entry point
            • Main entry point for the program
            • Prints information about Phylomer
            • Prints the main table
            • Test program entry point
            • Prints the FASTA_seq_seq_sequence_seqs_FILE_FILE_FILE_FILE_FILE_FILE_FILE_FILE
            • Initialize the tools menu
            • Key pressed events
            • Demonstrates how to test the fast sequence
            • Main method for testing only
            • Obtains the chart panel
            • Main method for testing
            • Calculate the genome
            • The main method
            • Prints information about Forester
            • Build the options menu
            Get all kandi verified functions for this library.

            forester Key Features

            No Key Features are available at this moment for forester.

            forester Examples and Code Snippets

            No Code Snippets are available at this moment for forester.

            Community Discussions


            How can I search a Laravel collection using WHERE LIKE (or equivilant)
            Asked 2021-May-27 at 13:04

            I have an equipment bookings register/calendar system that I am currently working on using Laravel.

            Equipment can be booked out directly to staff as needed or scheduled for future dates. For example Laptop 1 might have three bookings but the laptop can only be booked out to one person at a time.

            The system is up and running and the user can search for current/scheduled bookings. But I am having trouble allowing the user to search for the staff name as I need to split the query up.

            As you can see I am first getting all of the devices from lines 7-14.

            Then I am appending all of the bookings from each device to the $bookings collection in a new key called “available bookings”.

            I am wondering how I can search the available bookings key for the staff_name field as I have already returned the eloquent queries as collections.



            Answered 2021-May-27 at 13:04

            Hopefully, this might help you out.

            In your Device model class file add relation.



            given two tables and a third table relating the two, select only the rows from table A that match a list of table B rows, but don't match another list
            Asked 2020-Oct-07 at 14:14

            My test schema, data, and query:

            My query should select only the cars that match ALL of the IN () part features, and NONE of the NOT IN (), and it should only select each matching car once.

            In my sample data, when I run the query, I expect to see a single row with two columns, containing the id and name of the only car that matches the list of features in the IN () part of the where clause without matching the list of features in the NOT IN () part of the where clause:



            Answered 2020-Oct-07 at 14:13

            If you want one row per car you need aggregation. I think what you want is:



            Remove duplicate value and append the rest of the row value
            Asked 2020-Aug-18 at 22:03

            I am using the below code to crawl through multiple links on a page and grab a list of data from each corresponding link:




            Answered 2020-Aug-18 at 18:00
            • For you just kind information, dictionaries key must be unique in python. So the output you are expecting that is not possible.

            • Suggestion: You can store data in below way:



            JSON array to one hot encoding in pandas
            Asked 2020-Apr-15 at 23:33

            Let's say I have a pandas dataframe that looks like the following:



            Answered 2020-Apr-15 at 23:33


            Best way to read a file and output it nicely
            Asked 2020-Mar-05 at 10:28

            This is not duplicated, I'm really trying to do this but I can't.

            I have this log file and I want to archive all the information into database.



            Answered 2020-Mar-05 at 02:00


            Pyspark how to count the number of occurences of a string in each group and print multiple selected columns?
            Asked 2019-Dec-17 at 22:59

            My data set looks like this. Each row represents a car. Each car is located at an Auto Center, has a Model, Make, and a bunch of other attributes. This is a simplified version of the data frame. Extraneous rows and columns have been omitted for clarity.



            Answered 2019-Dec-17 at 22:59

            IIUC, you can do it with the following two steps:

            1. First groupby all columns you want to count on the occurences:



            Override horizontal positioning with ggrepel
            Asked 2019-Dec-12 at 20:26

            I'm working on a chart similar to a slopegraph, where I'd like to put labels along one or both sides with ample blank space to fit them on both sides. In cases where labels are very long, I've wrapped them using stringr::str_wrap to place linebreaks. To keep labels from overlapping, I'm using ggrepel::geom_text_repel with direction = "y" so the x-positions are stable but the y-positions are repelled away from one another. I've also got hjust = "outward" to align the left-side text at its right end and vice versa.

            However, it seems that the repel positioning places the label's bounding box with an hjust = "outward", but the text within that label has hjust = 0.5, i.e. text is centered within its bounds. Until now, I'd never noticed this, but with wrapped labels, the second line is awkwardly centered, whereas I'd expect to see both lines left-aligned or right-aligned.

            Here's an example built off the mpg dataset.



            Answered 2019-May-07 at 20:09

            TL;DR: probably a bug

            Long answer:

            I think it might be a bug in the code. I checked the gtable of the plot you made, wherein the hjust was specified numerically and correctly:



            Can I make a div override a container in Bootstrap 4?
            Asked 2019-Oct-25 at 15:35

            I'm working on this page where I have a container with 2 paragraphs. Between those 2 paragraphs I want (only on small screens) to show a quote in a div that has a full screen-width, however due to the container I can't seem to get it full width small screen view.

            I know it's possible to make multiple containers, but that's not what I want, since it has to look like THIS on middle and large screens (2 columns). As you can see the quote is also only on the small screens. Any way to fix this? This is my code




            Answered 2019-Oct-25 at 15:35

            I've found a way to fix it that works. Actually it wasn't that hard at all. I just deleted the padding on the container and added px-3 to the two paragraphs. This way the quote could be full-width and I keep my layout the way I want it. Thank you all for thinking with me.



            Only the first line is being printed on the GUI
            Asked 2019-Mar-17 at 05:11

            Given C cars (number not given), input two strings, Make and Model, two integers, Year and Mileage for each car. (Using stringTokenizer to help input)

            Store the C cars in a two different ArrayLists. One is sorted by Make, and the other isn't.

            They will be printed at different ends of the GUI window.

            Problem: All I can achieve at the moment is getting the very first line of the file to print onto the GUI. I tried messing with the location of the leftSide.append(unsortedList.get(i).toString() + "\n"); and its right counterpart, but to no avail. I'm unsure if it's an issue with the readFile method, issues with implementing the JFrame, or an inefficient for-loop in charge of iterating through the appending of the arrayLists to the StringBuilders.



            Answered 2019-Mar-17 at 05:03

            You are reading file just for one line. The line reading code is not in your loop, and you close your scanner within your first iteration. Fix it like this.



            Select rows with multi-conditional requirements in mysql
            Asked 2019-Mar-09 at 01:59

            I have five tables,their relationships were listed in pictures. I would like to write a query to display the first name, last name, street, city, state, and zip code of any customer who purchased a Foresters Best brand top coat between July 15, 2013, and July 31, 2013. If a customer purchased more than one such product, display the customer’s information only once in the output. Sort the output by state, last name, and then first name.

            I am OK with query with only one conditions, but for this multiple(Maybe indented?) conditions, I am totally stuck. I can analyze the structure like this:



            Answered 2019-Mar-09 at 01:38

            It's hard to be certain without sample data, but something like this should work:


            Community Discussions, Code Snippets contain sources that include Stack Exchange Network


            No vulnerabilities reported

            Install forester

            You can download it from GitHub.
            You can use forester like any standard Java library. Please include the the jar files in your classpath. You can also use any IDE and you can run and debug the forester component as you would do with any other Java program. Best practice is to use a build tool that supports dependency management such as Maven or Gradle. For Maven installation, please refer For Gradle installation, please refer .


            For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .
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