minnn | based consensus assembly for a wide range | Genomics library

by milaboratory Java Version: v10.1 License: Non-SPDX

X-Ray Key Features Code Snippets Community Discussions(7)Vulnerabilities Install Support

kandi X-RAY | minnn Summary

minnn is a Java library typically used in Healthcare, Pharma, Life Sciences, Artificial Intelligence, Genomics applications. minnn has no bugs, it has no vulnerabilities, it has build file available and it has low support. However minnn has a Non-SPDX License. You can download it from GitHub.

Universal tool for processing molecular-barcoded Next Generation Sequencing data.

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Quality

Security

License

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Support

minnn has a low active ecosystem.

It has 7 star(s) with 1 fork(s). There are 6 watchers for this library.

It had no major release in the last 12 months.

There are 25 open issues and 111 have been closed. On average issues are closed in 123 days. There are 3 open pull requests and 0 closed requests.

It has a neutral sentiment in the developer community.

The latest version of minnn is v10.1

Quality

minnn has no bugs reported.

Security

minnn has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

License

minnn has a Non-SPDX License.

Non-SPDX licenses can be open source with a non SPDX compliant license, or non open source licenses, and you need to review them closely before use.

Reuse

minnn releases are available to install and integrate.

Build file is available. You can build the component from source.

Installation instructions are not available. Examples and code snippets are available.

Top functions reviewed by kandi - BETA

kandi has reviewed minnn and discovered the below as its top functions. This is intended to give you an instant insight into minnn implemented functionality, and help decide if they suit your requirements.

Convert all tokens into pattern strings
Replace a portion of a pattern
Parses a group edge position
Parses a FilterPattern
Takes a list of matches and returns a list of matches that are filtered
Combines the input matches into a single match
Helper method to check if all matches are compatible
Get matches by match ports
This method processes the given cluster and returns the consulus
Checks if there is any specific character in the given string starting at the given position
Merge two sequences together
Calculates the length of the border patterns
Converts this input to a sequence read
Calculates the number of targets that should be used
This method calculates the stats cache for all letters and counts
Main entry point for scanning
Runs the test
Validates the input
Returns the maximum overlap of the sequence
Generate a match from the alignment pattern
Creates a new parsed read from the input with the specified groups
Add description groups to the original match
Reads the file header
Extract a full string from a tokenized string
Checks if there can be added to a cluster
Processes the consus of a cluster

Get all kandi verified functions for this library.

minnn Key Features

No Key Features are available at this moment for minnn.

minnn Examples and Code Snippets

No Code Snippets are available at this moment for minnn.

Community Discussions

Trending Discussions on minnn

AnalysisException: Syntax error in SQL After multiple join

Hive - Use lateral view explode(split()) on join table

Combine 3 big tables with 2 joins

Correct SQL query throwing ParseException on Spark2-Scala

what is difference between "import module" and "from module import *"

What's wrong when I allocate and free memory for a nested struct with union inside

Python - Max and Min sorting

QUESTION

AnalysisException: Syntax error in SQL After multiple join

Asked 2019-Aug-19 at 09:35

I have this query:

...

ANSWER

Answered 2019-Aug-19 at 09:35

I just figured it out by myself. I had to close parenthesis before as minnn.

...

Source https://stackoverflow.com/questions/57528859

QUESTION

Hive - Use lateral view explode(split()) on join table

Asked 2019-Jul-29 at 17:19

I want to use this simple topic on a more complicated example. This is my try:

...

ANSWER

Answered 2019-Jul-29 at 17:19

Semicolon has special meaning in Hive and should be shielded. Use double-slash in Hive:

Source https://stackoverflow.com/questions/57255866

QUESTION

Combine 3 big tables with 2 joins

Asked 2019-Jul-19 at 15:41

I have three tables using complex. I run them separately without problems. Here are the queries:

TABLE A:

...

ANSWER

Answered 2019-Jul-19 at 15:41

I have no idea if your queries are correct, but common table expressions (CTE) can frequently be used to keep result set joins clean.

Source https://stackoverflow.com/questions/57115427

QUESTION

Correct SQL query throwing ParseException on Spark2-Scala

Asked 2019-Jul-15 at 09:43

I wrote a HQL query that works fine in Hive, transforming it into a dynamic sparkSql Scala query throws ParseException:

...

ANSWER

Answered 2019-Jul-15 at 09:43

Try wrapping up select queries with an alias at 16th,21st line.

Example:

Source https://stackoverflow.com/questions/57036120

QUESTION

what is difference between "import module" and "from module import *"

Asked 2019-May-03 at 11:44

I am new in python and trying to understand the difference between "import module" and "from module import *". I was thinking both are the same as they import all the functions from the module but doesn't see so. My confusion stems from the below code--

...

ANSWER

Answered 2019-May-03 at 11:44

Importing a module adds a single symbol into the namespace, but from which you can reference exported objects:

Source https://stackoverflow.com/questions/55968650

QUESTION

What's wrong when I allocate and free memory for a nested struct with union inside

Asked 2018-Feb-20 at 04:56

I use Linux and programming with its C compiler tools and the IDE Geany.

I try to learn how to use structs with union inside, and allocate mem for them dynamically. I have a dynamicaly alocated array with my nested structs;

...

ANSWER

Answered 2018-Jan-29 at 12:37

Your use of content_count is wrong:

Source https://stackoverflow.com/questions/48500511

QUESTION

Python - Max and Min sorting

Asked 2017-Apr-02 at 17:36

EDIT: testing out the maxxx function with new changes. output still the print statement in 2nd line. (no indentation errors thrown) I need to sort this list using custom function (I cannot use built in functions).

When I run, it only outputs the second print statement. How can I make it work? ...

ANSWER

Answered 2017-Apr-02 at 17:36

There's actually a decent number of issues. Basically, your return was in the wrong spot, meaning it would only check the first element. I'd recommend just reading through the following and comparing it with your own code.

Source https://stackoverflow.com/questions/43165101

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install minnn

You can download it from GitHub.
You can use minnn like any standard Java library. Please include the the jar files in your classpath. You can also use any IDE and you can run and debug the minnn component as you would do with any other Java program. Best practice is to use a build tool that supports dependency management such as Maven or Gradle. For Maven installation, please refer maven.apache.org. For Gradle installation, please refer gradle.org .