dng | Archschema : graphs of related Pfam domain architectures | Genomics library
kandi X-RAY | dng Summary
kandi X-RAY | dng Summary
![] ArchSchema plots the relationships between Pfam domain architectures. An architecture is defined as the sequence of Pfam domains common to a family of protein sequences. On the plot each architecture is represented by a node with the domains colour-coded, as shown in the examples below. The red underlines in (c) indicate the extent to which 3D structures of the domains and architectures are available in the PDB. Left-clicking on a node shows a panel containing information about the constituent domains, the protein sequences having the given architecture, and any sequences that have whole or partial structures in the PDB. You can display protein sequence (or, alternatively, the protein structures) associated with each architecture, as in the examples below. Where there are too many sequence or structure nodes to show, a selection are shown and are colour pink (as in the third example). ![] Many satellite nodes. Acknowledgments: Archschema is built using the [Prefuse] open source, java-based, data visualization toolkit. Written by: Asif Tamuri; Modified by: Roman Laskowski; Version: 1.1; Date: 17 July 2009.
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Top functions reviewed by kandi - BETA
- Plot the graph nodes
- Draw a line
- Write an unbounded bounding box
- Plot the sequence of domains for the given architecture node
- Start the application
- Submit a Pfam submit action
- Action called when a sequence submit is done
- Show a table of sequence identifiers
- Add a spacer table to the string builder
- Test program
- Draw an elliptic ellipse
- Calculate the spring length of an edge
- Prints the similarity matrix
- Returns the raw shape of the graphical item
- Generate a new search icon for a given node
- Write the page headers for the current page
- Main program loop
- Run the benchmark
- Plot the edges in the graph
- Initialize the form components
- Initialise the form components
- Initialises the variables
- Render a graphical item
- Initialize the components
- Write the main header records
- Handles a GET request
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dng Examples and Code Snippets
Community Discussions
Trending Discussions on dng
QUESTION
How do I read an image using the rawpy library, from a url?
I have tried
...ANSWER
Answered 2022-Jan-27 at 12:20JPEG is not a Raw Image Format. You need to send some raw data as input.
So,
- If you just want to process some JPEGs, try Pillow.
- If you want to process raw images, change your input data.
QUESTION
I created a code which change a certain pixels on the screen but when i want to change more pixels the performance of program will slow down.
You will see glitches and it's not that pretty as it should be.
Question:
How can i inprove performance of the code.
If I want to change more pixel or eventually all pixels on the screen.
I thought about using SETBITMAPBITS but I'm not sure how to it works. I have no experience with it.
Is there any other solution?
Example of my code: < Console app >
...ANSWER
Answered 2021-Dec-20 at 09:54If I understand correctly, you are trying to draw outside a window.
Every time you SetPixel
you send a WM_PAINT message, which repaints the whole window.
That dramatically slows down your program. What you should do is use GDI, GDI+ or Direct2D to create a bitmap or a rectangle to then draw it at once.
Drawing outside a window is never a good idea. You have no control on what you just drew, and it will disappear when something interrupts it.
If you want a blue block without a title bar, create a layered window, then create a rectangle and draw it.
Microsoft's documentation might not be a tutorial, but it is informative.
Here is the Direct2D documentation: https://docs.microsoft.com/en-us/windows/win32/direct2d/getting-started-with-direct2d
And here is how to create a layered window: https://docs.microsoft.com/en-us/windows/win32/winmsg/window-features#layered-windows
Edit:
Comment said that SetPixel
doesn't send WM_PAINT
. What I am saying is SetPixel
repaints the window.
QUESTION
I want to convert RAW image data (RGGB) to sRGB image. There are many specialized ways to do this but to first understand the basics, I've implemented some easy alogrithms like debayering by resolution-reduction. My current pipeline is:
- Rescale the u16 input data by blacklevel and whitelevel
- Apply white balance coefficents
- Debayer with size reduction, average for G: g=((g0+g1)/2)
- Calculate pseudo-inverse for D65 illuminant XYZ_TO_CAM (from Adobe DNG)
- Convert debayered RGB data to XYZ by CAM_TO_XYZ
- Convert XYZ to D65 sRGB (matrix taken from Bruce Lindbloom)
- Apply gamma correction (simple routine for now, should be replaced by sRGB gamma)
- Rescale from [minval..maxval] to [0..1] and convert f32 to u16
- Save as tiff
The problem is that if I skip the white balance coefficent multiplication (or just replace them by 1.0) the output image already looks acceptable. If I apply the coefficents (taken from AsShot in DNG) the output has a huge color cast. And I'm not sure if I have to multiply by coef or 1/coef.
The first image is the result of the pipeline with wb_coefs set to 1.0.
The second image is the result with the "correct" wb_coefs.
What is wrong in my pipeline?
Additional question:
- I'm not sure about the rescaling process. Do I've to rescale into [0..1] after every step or is it enough to rescale during u16 conversion as final stage?
Full code:
...ANSWER
Answered 2021-Aug-17 at 10:40The main reason for getting wrong colors is that we have to normalize the rows of rgb2cam
matrix to 1
, as described in the following guide.
According to DNG spec:
ColorMatrix1 defines a transformation matrix that converts XYZ values to reference camera native color space values, under the first calibration illuminant.
It means that if the calibration illuminant is D65, the ColorMatrix converts XYZ to "camera RGB".
(Convert it as is, without using any white balance scaling coefficients).
- The inverse ColorMatrix, converts from "camera RGB" to XYZ.
After converting XYZ to sRGB, the result is color balanced sRGB.
The conclusions is that ColorMatrix includes the while balance coefficients in it (the white balancing coefficients apply D65 illuminant). - Normalizing the rows of
rgb2cam
to1
neutralizes the while balance coefficients, and keeps only the "Color Correction Matrix" (the math is a bit complicated). - Without normalizing the rows, we are scaling by while balance multipliers two times:
- Scale coefficients from ColorMatrix that balances the input to D65.
- Scale coefficients taken from AsShotNatural that balances the input to the illuminant of the scene (illuminant of the scene is close to D65).
The result of scaling twice is an extreme color cast.
Tracking the maximum in order to avoid "magenta cast in the highlights":
Instead of tracking the actual maximum color values in the input image, we suppose to track the "theoretical maximum color value".
- Take
whitelevel - blacklevel
and scale by the white balance multipliers.
Track the result...
The guiding rule is that the colors supposed to be the same in both cases:
- Applying the processing to small patches of the image, and places the patches together (where we can't track the global minimum and maximum).
- Applying the processing to the entire image.
I suppose you have to track the maximum of scaled whitelevel - blacklevel
, only when white balance multipliers are less than 1
.
When all the multipliers are 1
or above, we can clip the result to 1.0
, without tracking the maximum.
Note:
- there is probably an advantage of scaling down, and tracking the maximum, but I don't know this subject.
In my solution we just multiply upper (above 1.0), and clip the result.
The solution is based on Processing RAW Images in MATLAB guide.
I am posting both MATLAB implementation and Python implementation (but no Rust implementation).
The first step is extracting the raw Bayer image from sample.dng
using dcraw command line:
QUESTION
I am trying to use Aspose.Imaging version 21.7.0 to compress some .jpg and .png byte arrays.
My Winforms Click event:
...ANSWER
Answered 2021-Aug-01 at 16:17Since Aspose.Imaging is a paid product, you should contact them at their site for support.
There is a free forum specially for Aspose products: https://forum.aspose.com/
Everyone that have experienced with Aspose errors know that the errors are hard to understand due to their obfuscation of the code, so the best solution is to contact them directly.
QUESTION
What I have now: (problem at bottom of page)
...ANSWER
Answered 2021-Jun-14 at 03:08You can't exactly get input to a file but you can get the input from the user and insert it into a file. You open a file as open("filename.txt,"r")
to read or "w"
to write or "r+"
for both.
QUESTION
I want to perform the color calibration of my camera. That's why I search demosaic algorithm, which can provide the closest color to color of a real object. That's why I want:
- create synthetic images in OpenCV with known colors
- mosaic it
- pass it in an algorithm for estimation of efficiency
I use libraw for unpacking raw images and OpenCV for processing and storing them.
So, the question is, is there a library that can provide me different demosaic algorithms(i am ready to convert my synthetic image from Mat to C-style array) where I can pass my mosaic image and receive demosaic image. I think that it is possible to convert my image from tiff to dng and use RawTherapee for demosaicing, but it looks more complicated.
...ANSWER
Answered 2021-May-23 at 13:32I solved that problem by using dng sdk.
Pipeline for using class from link in the end of answer is here:
QUESTION
I am currently building a small program that allows searching for phrases in actors' dialog, using transcribed text files from video clips. I run into a few issues as described below...
Create user input:
...
ANSWER
Answered 2021-Feb-01 at 21:01You can use an empty list and add items to it in each loop like this:
QUESTION
I am trying to use the MediaDevices library to download files from my phone. I am able to see the files on my phone, but MediaDevice.DownloadFile() throws a NotImplemented exception. I've got version 1.8.0 of the library. Here is my program:
...ANSWER
Answered 2020-Nov-03 at 11:09there is an issue raised on github to solve this problem (https://github.com/Bassman2/MediaDevices/issues/32). The problem is that you are building your app on top of .NET Core 3.1, and this lib works well on .NET Framework 4.* as they warn when you build your project:
Package 'MediaDevices 1.8.0' was restored using '.NETFramework,Version=v4.6.1, .NETFramework,Version=v4.6.2, .NETFramework,Version=v4.7, .NETFramework,Version=v4.7.1, .NETFramework,Version=v4.7.2, .NETFramework,Version=v4.8' instead of the project target framework '.NETCoreApp,Version=v3.1'. This package may not be fully compatible with your project
QUESTION
I'm trying to teach my network on data that is stored in google cloud storage. I'm teaching using google colab pro resources and when I do that, I got around 50$ bill a day for "egress between NA and EU". I'm located in Russia and data storage is in Germany so I have absolutely no idea why this data egress to NA. How can I stop this behavior and why does it happen, because I don't want to pay for something I don't really need.
Link between storage and colab looks like this:
...ANSWER
Answered 2020-Jun-10 at 11:18Google Colab server is run in USA (North America).
So, to avoid network cost, you should host your gcs bucket in USA as well (instead of Germany).
QUESTION
I've trying to open LinearDNG
file in my MacOS app.
As far as I've investigated, that's not possible with CoreImage
.
So, the questions:
- Is it possible to open
LinearDNG
file as 16-bit/8-bit RGBA data withCoreImage
? - Is it possible to open
LinearDNG
file as 16-bit/8-bit RGBA data withdcraw
? - Do you know the other libs to open
LinearDNG
file as 16-bit/8-bit RGBA data?
My LinearDNG files are 16-bit. The relevant EXIF data:
...ANSWER
Answered 2020-Jul-10 at 07:22Well, I've tried LibRaw: https://github.com/LibRaw/LibRaw.
It's able to export my LinearDNG
to TIFF. And I can open TIFF with CoreImage
.
The white balance is wrong though. I assume this is because libraw
reads metadata wrong ( file samples/raw-identify.cpp
).
The code for exporting to TIFF is in file samples/simple_dcraw.cpp
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You can use dng like any standard Java library. Please include the the jar files in your classpath. You can also use any IDE and you can run and debug the dng component as you would do with any other Java program. Best practice is to use a build tool that supports dependency management such as Maven or Gradle. For Maven installation, please refer maven.apache.org. For Gradle installation, please refer gradle.org .
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