OLS | Ontology Lookup Service from SPOT at EBI | Search Engine library

 by   EBISPOT JavaScript Version: v3.2.5-main-test License: Apache-2.0

kandi X-RAY | OLS Summary

kandi X-RAY | OLS Summary

OLS is a JavaScript library typically used in Database, Search Engine applications. OLS has no bugs, it has no vulnerabilities, it has a Permissive License and it has low support. You can download it from GitHub.

This is the entire codebase for the EBI OLS. OLS has been developed around two key ontology indexes that can be built and used independently from the core website. We provide services to build a Solr index and a Neo4j index. The Solr index is used to provide text-based queries over the ontologies while the Neo4j index is used to query the ontology structure and is the primary driver of the OLS REST API. OLS has been developed with the Spring Data and Spring Boot framework. You can build this project with Maven and the following Spring Boot applications will be available to run. All of the apps are available under the ols-apps module. To run a complete local OLS installation you will need a MongoDB database. This is a lightweight database that is used to store all the ontology configuration and application state information. See here for more information
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            kandi-support Support

              OLS has a low active ecosystem.
              It has 71 star(s) with 35 fork(s). There are 21 watchers for this library.
              OutlinedDot
              It had no major release in the last 12 months.
              There are 169 open issues and 323 have been closed. On average issues are closed in 84 days. There are 1 open pull requests and 0 closed requests.
              It has a neutral sentiment in the developer community.
              The latest version of OLS is v3.2.5-main-test

            kandi-Quality Quality

              OLS has no bugs reported.

            kandi-Security Security

              OLS has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

            kandi-License License

              OLS is licensed under the Apache-2.0 License. This license is Permissive.
              Permissive licenses have the least restrictions, and you can use them in most projects.

            kandi-Reuse Reuse

              OLS releases are available to install and integrate.
              Installation instructions, examples and code snippets are available.

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            Currently covering the most popular Java, JavaScript and Python libraries. See a Sample of OLS
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            OLS Key Features

            No Key Features are available at this moment for OLS.

            OLS Examples and Code Snippets

            No Code Snippets are available at this moment for OLS.

            Community Discussions

            QUESTION

            How to test all possible iterations in a multiple linear regresion and return the best R-Squared and P values combination
            Asked 2021-Jun-15 at 20:33

            I am trying to get the best combination to reach the best R Squared and P value. In this case, I have 6 columns to run the code, but I have the R-Squared and P values just for this combo ([col0, col1, col2, col3, col4, col5] vs [col6]). I want to test all the possible combinations, something like:

            [col0] vs [col6]

            [col0 + col1] vs [col6]

            [col0 + col1 + col2] vs [col6]...

            Is there any way to automatize this? So I dont have to run all possible combinations on hand.

            ...

            ANSWER

            Answered 2021-Jun-15 at 20:33

            What you're looking to implement is the powerset function shown in the iterools documentation:

            Source https://stackoverflow.com/questions/67992739

            QUESTION

            Deploying Problems with Tizen Studio - Certificate Error -14
            Asked 2021-Jun-15 at 07:34

            Since a week i have massive problem to deploy apps to my Samsung Gear S3 I tried following points to solve this problem but without any success:

            1. Clean install of Tizen Studio.
            2. Package Manager -> Tizen SDK Tools
            3. Package Manager -> installed all wearables -> samsung certificate extension
            4. Package Manager -> installed all wearables -> samsung wearable extension
            5. open project (web based app)
            6. open device manager and connect the watch
            7. open certificate manager and add a certificate with a samsung account.
            8. deploy the app Error -14

            Watch Informations

            Watch: Samsung Gear S3, Model-Number: SM-R760, Tizen 3.0.0.2, Softwareversion: R760XXU2CRH1, developlmentmode: ON, debugging: ON

            Does anyone has an idea how i can solve this issue?

            Best regards, doc

            ...

            ANSWER

            Answered 2021-Jun-15 at 07:34

            Solution

            Firmwareupgrade to newest version: connect watch to WLAN and make the update

            then add a new samsung certificate. after that the problem was solved.

            Source https://stackoverflow.com/questions/67917921

            QUESTION

            How to create in C or C++ the contents value of Sig type object for digital signature in PDF?
            Asked 2021-Jun-15 at 06:14

            We are programmatically creating PDF using our in house lib (C++) by adding all the required objects so that PDF readers can render them properly. Currently we are enhancing the lib to support digital signatures in PDF. Our users will use USB token or Windows certificates to sign the PDF. On studying raw PDF file with digital signature, we were able to make sense of all the objects except for the contents of Sig type object.

            ...

            ANSWER

            Answered 2021-Jun-10 at 16:48

            Ok, the signature container is embedded correctly.

            But there are issues with the signature container itself:

            • Both in the SignedData.digestAlgorithms collection and in the SignerInfo.digestAlgorithm value you have used the OID of SHA1withRSA, but that is a full signature algorithm, not the mere digest algorithm SHA1 expected there.

            • Then the SHA1 hash of the signed bytes is BB78A402F7A537A34D6892B83881266501A691A8 but the hash you signed is 90E28B8A0D8E48691DAFE2BA10A4761FFFDCCD3D. This might be because you hash buffer2 and

              buffer2 has empty contents data (/Contents <>)

              The hex string delimiters '<' and '>' also belong to the contents value and, therefore, must also be removed in buffer2.

            Furthermore, your signature is very weak:

            • It uses SHA1 as hash algorithm. SHA1 meanwhile has been recognized as too weak a hash algorithm for document signatures.
            • It doesn't use signed attributes, neither the ESS signing certificate nor the algorithm identifier protection attribute. Many validation policies require such special attributes.

            Source https://stackoverflow.com/questions/67667032

            QUESTION

            Python matplotlib drawing figures line by line
            Asked 2021-Jun-14 at 19:21

            I'm trying to make an animation which will:

            1. Show some points on plotting area
            2. Connect some of these points by straight lines one by one The picture below shows the steps

            https://i.stack.imgur.com/4nyN9.png

            How can I do it in matplotlib? I have tried smth with:

            ...

            ANSWER

            Answered 2021-Jun-14 at 19:21
            Issue with the last line
            1. plot takes x values and y values as as first and second arguments
            2. here you give mixed values i.e. [x0, y0] and [x2, y2] instead of [x0, x2] and [y0, y2]
            3. this works for first two lines because your values form a symmetric matrix for first two pair of rows in data

            I hope you understand the explanation

            You need to restructure the data to make array of x values and y values, try:

            Code:

            Source https://stackoverflow.com/questions/67974259

            QUESTION

            Matrix algebra OLS estimation two parameters
            Asked 2021-Jun-14 at 12:31

            The regular OLS estimator is denoted as: b =(X'X)^{-1}X'y. My question is what if your model has more than one parameter b. In the image I have worked out the problem formulation for multiple parameter estimation using OLS.

            OLS with two parameters

            ...

            ANSWER

            Answered 2021-Jun-14 at 12:31

            The general request in Stack Overflow is to please type things in rather than attach images. I found the image confusing in that you use the same symbol Y to denote two very different things -- a vector and a matrix. I'll use Z for the vector.

            You want to find vectors a and b to best fit

            Source https://stackoverflow.com/questions/67943628

            QUESTION

            where is Azure DevOps build artifact stored
            Asked 2021-Jun-14 at 04:32

            I am attempting to create a CI pipeline for a WCF project. I got the CI to successfully run but cannot determine where to look for the artifact. My intent is to have the CI pipeline publish this artifact in Azure and then have the CD pipeline run transformations on config files. Ultimately, we want to take that output and store it in blob storage (that will probably be another post since the WCF site is for an API).

            I also realize that I really do not want to zip the artifact since I will need to transform it anyway.

            Here are my questions:

            1. Where is the container that the artifact 'drop' is published to?
            2. How would I publish the site to the container without making it a single file.

            Thanks

            ...

            ANSWER

            Answered 2021-Jun-14 at 04:32

            You will find your artifacts here:

            You got single file because you have in VSBuild /p:PackageAsSingleFile=true

            Also you may consider using a newer task Publish Pipeline Artifact. If not please check DownloadBuildArtifacts task here

            Source https://stackoverflow.com/questions/67963655

            QUESTION

            How to update the state of nested json object in react using hooks
            Asked 2021-Jun-13 at 20:25

            I have a global state of the format like this:

            ...

            ANSWER

            Answered 2021-Jun-13 at 20:22
            Issue

            I think the main issue is the usage of state as a React key on the Container component in App. Each time state updates you are specifying a new React key, and React will handle this by unmounting the previous version and mounting a new version of Container.

            Source https://stackoverflow.com/questions/67962300

            QUESTION

            Is it legal for a compiler to ignore an #include directive?
            Asked 2021-Jun-13 at 14:30

            As I understand, when compiling a compilation unit, the compiler's preprocessor translates #include directives by expanding the contents of the header file1 specified between the < and > (or ") tokens into the current compilation unit.

            It is also my understanding, that most compilers support the #pragma once directive guarding against multiply defined symbols as a result of multiple inclusion of the same header. The same effect can be produced by following the include guard idiom.

            My question is two-fold:

            1. Is it legal for a compiler to completely ignore an #include directive if it has previously encountered a #pragma once directive or include guard pattern in this header?
            2. Specifically with Microsoft' compiler is there any difference in this regard whether a header contains a #pragma once directive or an include guard pattern? The documentation suggests that they are handled the same, though some user feels very strongly that I am wrong, so I am confused and want clarification.

            1 I'm glossing over the fact, that headers need not necessarily be files altogether.

            ...

            ANSWER

            Answered 2021-Jun-13 at 08:31

            It the compiled program cannot tell whether the compiler has ignored a header file or not, it is legal under the as-if rule to either ignore or not ignore it.

            If ignoring a file results in a program that has observable behaviour different from a program produced by processing all files normally, or ignoring a file results in an invalid program whereas processing it normally does not, then it is not legal to ignore such file. Doing so is a compiler bug.

            Compiler writers seem to be confident that ignoring a once-seen file that has proper include guards in place can have no effect on the resulting program, otherwise compilers would not be doing this optimisation. It is possible that they are all wrong though, and there is a counterexample that no one has found to date. It is also possible that non-existence of such counterexample is a theorem that no one has bothered to prove, as it seems intuitively obvious.

            Source https://stackoverflow.com/questions/67955853

            QUESTION

            How to get HTML text without meta information from component QTextDocument
            Asked 2021-Jun-13 at 08:24
            Description

            I created a TextArea component in QML, and similar to this example, I created a DocumentHandler class based on a pointer to a QQuickTextDocument, which is taken through the textDocument property. I need this in order to be able to format the text, that is, make it bold, underlined, italic, strikeOut etc.

            What I need

            I need to get a text where the formatted parts will be presented as HTML tags.

            e.g. Bold text ultimately I would like to get in the form Bold text. Or for example Bold and italic text I would like to get in the form Bold and italic text (the order in which the tags are placed does not matter).

            What I tried

            I tried to use the toHtml() function, but this function does not suit me because:

            1. It generates a lot of unnecessary information that I don't need. For example for Bold text it returned the following result:
            ...

            ANSWER

            Answered 2021-Jun-13 at 08:24
            Description

            If I understood correctly, at the moment there is no way to get formatted text with HTML tags without meta information that is generated by the QTextDocument using the toHtml() function. Therefore, I decided to manually do this work using the QTextCursor class.

            Code

            I have a structure that provides information about tag:

            Source https://stackoverflow.com/questions/67920546

            QUESTION

            How to refresh GridLayout in Kivy with kv file
            Asked 2021-Jun-13 at 06:24

            I need help.

            I created a small mobile application with Kivy.

            I have two screens: ScreenList and ScreenDetail.

            However the screen(ScreenList) containing GridLayout does not refresh

            ScreenList: contains a list of items

            ScreenDetail: Contains the details of a single item.

            How the app works:

            1. When I click on the first item on button 1
            2. I go to the details of the item.
            3. I modify the second field. I replace the text: Firt element for First and update data
            4. After recording, I redirect the application to the screens which contain (ScreenList) the list of elements.
            5. But the list of elements remains unchanged then the data has been modified in the database. 6.And when I return to the screen (ScreenDetail) which contains the details, there I see that the data is updated.

            How can I refresh the item list in ScreenList?

            Here are the pictures as an example

            List before update

            before update

            after update

            List after update

            Here is the python code:

            ...

            ANSWER

            Answered 2021-Jun-13 at 06:24
            Few notes to take, in general, when working with Kivy
            • When you're trying to share data in between screens, it's often useful to use app methods instead of specific methods of screens.

            • And when you need to create lots of buttons, maybe inside a loop, and bind methods on its events( on_press, on_release), it's often bad to create button instances on the fly and bind methods on its events because you'll need to do extra work to make sure that those bound methods are called with right parameters when events are fired. Rather create a custom class template and use that instead.

            Working solution for your problem (only showing sections that has been added/updated

            Created custom GridLayout:

            Source https://stackoverflow.com/questions/67954613

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install OLS

            Other build errors you may come across are the following:. This is the error you get when you compile OLS with Java 11. The fix for this build error is to ensure your Maven installation is indeed using Java 8 for compilation.
            Wrong version of Java used:

            Support

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