ideogram | Chromosome visualization for the web | Genomics library

by eweitz JavaScript Version: 1.45.1-beta License: Non-SPDX

X-Ray Key Features Code Snippets Community Discussions(2)Vulnerabilities Install Support

kandi X-RAY | ideogram Summary

ideogram is a JavaScript library typically used in Artificial Intelligence, Genomics applications. ideogram has no bugs, it has no vulnerabilities and it has low support. However ideogram has a Non-SPDX License. You can install using 'npm i ideogram-tt' or download it from GitHub, npm.

Ideogram.js is a JavaScript library for chromosome visualization. Ideogram supports drawing and animating genome-wide datasets for human, mouse, and many other eukaryotes. The Ideogram API for annotations supports histograms, heatmaps, overlays, and points of arbitrary shape and color layered in tracks. Ideogram can depict haploid, diploid or higher ploidy genomes (e.g. plants), as well as aneuploidy, genetic recombination, and homologous features between chromosomes. Ideogram can be embedded as a reusable component in any web page or application, and leverages D3.js and SVG to achieve fast, crisp client-side rendering. You can also integrate Ideogram with JavaScript frameworks like Angular, React, and Vue, as well as data science platforms like R and Jupyter Notebook.

Support

Quality

Security

License

Reuse

Support

ideogram has a low active ecosystem.

It has 251 star(s) with 66 fork(s). There are 21 watchers for this library.

There were 3 major release(s) in the last 12 months.

There are 32 open issues and 82 have been closed. On average issues are closed in 61 days. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of ideogram is 1.45.1-beta

Quality

ideogram has 0 bugs and 0 code smells.

Security

ideogram has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

ideogram code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

ideogram has a Non-SPDX License.

Non-SPDX licenses can be open source with a non SPDX compliant license, or non open source licenses, and you need to review them closely before use.

Reuse

ideogram releases are available to install and integrate.

Deployable package is available in npm.

Installation instructions, examples and code snippets are available.

ideogram saves you 3804 person hours of effort in developing the same functionality from scratch.

It has 8739 lines of code, 84 functions and 223 files.

It has high code complexity. Code complexity directly impacts maintainability of the code.

Top functions reviewed by kandi - BETA

kandi has reviewed ideogram and discovered the below as its top functions. This is intended to give you an instant insight into ideogram implemented functionality, and help decide if they suit your requirements.

check if node overlap
Calculates the area for the catalog data
Ranges the annotations of an annotation
function to fill annotations
init and set of feature hints
returns the interactions for the given genealog
Decor function that will be used to add a relationship to the hierarchy
Set taxon data
adds the annotated sample ID to the graph
Initialize related .

Get all kandi verified functions for this library.

ideogram Key Features

No Key Features are available at this moment for ideogram.

ideogram Examples and Code Snippets

No Code Snippets are available at this moment for ideogram.

Community Discussions

Trending Discussions on ideogram

Unable to use dash_bio for plotting ideograms due to incorrect Javascript dependency

What happens when I try to get the bytes for a String but the conversion from Character to Byte overflows the Integer length?

QUESTION

Unable to use dash_bio for plotting ideograms due to incorrect Javascript dependency

Asked 2022-Mar-22 at 08:37

I am trying to include dash_bio ideogram in my proyect. I have just included in my project a simple ideogram as follows:

...

ANSWER

Answered 2022-Mar-18 at 13:10

I've just pasted your code into a MWE dash app. This works without issues in my environment.

Are you running behind any firewalls that block unauthorised URLs?
assuming you are using dash_bio 1.0.1
does this work as a MWE outside django in your environment?
looked into django_plotly_dash and found it does not work with dash 2.+

Source https://stackoverflow.com/questions/71483649

QUESTION

What happens when I try to get the bytes for a String but the conversion from Character to Byte overflows the Integer length?

Asked 2021-Jan-02 at 03:46

Given a String of length Integer.MAX_VALUE which contains characters that require more than one byte to represent, such as Chinese ideograms, what result would I get if I executed String.getBytes()? Is there any good way of testing for this type of error?

...

ANSWER

Answered 2021-Jan-02 at 03:04

Based on what seems to be the source code for the JRE String class, it calls an 'encode' method in the StringCoding class, which calculates the maximum number of bytes needed for the given string, and returns the result in an int. See the 'encode' method which calls 'scale'.

So, depending on the exact result, you'll either get string truncation (if the result is positive) or total failure (if the result appears negative). Since I didn't chase the logic down into the ArrayEncoder class, it's possible there will also be an 'array index out of bounds' exception during the conversion.

(Link is to some random copy of source code on the internet, probably not the current code).

This is presumably of theoretical interested only -- a String with 2 billion characters is not likely to perform well.

Source https://stackoverflow.com/questions/65535585

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

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Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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