gcat | Genome Comparison and Analysis Toolkit | Genomics library

 by   gawbul Perl Version: Current License: GPL-3.0

kandi X-RAY | gcat Summary

kandi X-RAY | gcat Summary

gcat is a Perl library typically used in Artificial Intelligence, Genomics applications. gcat has no bugs, it has no vulnerabilities, it has a Strong Copyleft License and it has low support. You can download it from GitHub.

Genome Comparison and Analysis Toolkit Version 0.81. An adaptable and efficient toolkit for large-scale evolutionary comparative genomics analysis. Written in the Perl programming language, GCAT utilizes the BioPerl, Perl EnsEMBL and R Statistics APIs. Part of a PhD thesis entitled "Evolutionary Genomics of Organismal Diversity". Coded by Steve Moss gawbul@gmail.com C/o Dr David Lunt and Dr Domino Joyce Evolutionary Biology Group The University of Hull.
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            kandi-support Support

              gcat has a low active ecosystem.
              It has 4 star(s) with 4 fork(s). There are no watchers for this library.
              OutlinedDot
              It had no major release in the last 6 months.
              gcat has no issues reported. There are no pull requests.
              It has a neutral sentiment in the developer community.
              The latest version of gcat is current.

            kandi-Quality Quality

              gcat has 0 bugs and 0 code smells.

            kandi-Security Security

              gcat has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.
              gcat code analysis shows 0 unresolved vulnerabilities.
              There are 0 security hotspots that need review.

            kandi-License License

              gcat is licensed under the GPL-3.0 License. This license is Strong Copyleft.
              Strong Copyleft licenses enforce sharing, and you can use them when creating open source projects.

            kandi-Reuse Reuse

              gcat releases are not available. You will need to build from source code and install.
              Installation instructions, examples and code snippets are available.

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            gcat Key Features

            No Key Features are available at this moment for gcat.

            gcat Examples and Code Snippets

            No Code Snippets are available at this moment for gcat.

            Community Discussions

            QUESTION

            ReactJS: Multiple Sort in Table
            Asked 2022-Apr-05 at 10:40

            I have the following code in React. This sorts by Owner and then Category. I want to also sort by Brand, so Owner -> Category -> Brand.

            If I put another .sort function in then it will sort by Brand, but ignore Category. Any idea how to rewrite this so I can get a 3 level sort?

            ...

            ANSWER

            Answered 2022-Apr-05 at 10:40

            Try to change your sort function like this:

            Source https://stackoverflow.com/questions/71747304

            QUESTION

            Problem with alligning my output (f string) Python
            Asked 2022-Jan-07 at 11:49

            I am having some trouble with aligning things in my output. Down below I have copied the expected output and the output my code gives me. It is very similar, however, the numbers aren't aligned correctly. My numbers would align to the right (and this first column can only be as long as the longest number in this column). What am I forgetting in my code?

            Expected:

            ...

            ANSWER

            Answered 2022-Jan-07 at 01:55

            You need to add number after > to indicate length. Try:

            Source https://stackoverflow.com/questions/70605075

            QUESTION

            Problem with formatting my f string output in Python
            Asked 2022-Jan-04 at 17:08

            I am trying to get the output of my code formatted in the following way:

            Expected:

            ...

            ANSWER

            Answered 2022-Jan-04 at 15:15

            Just add the newline character (\n) to the end of your string:

            Source https://stackoverflow.com/questions/70580989

            QUESTION

            How to search for patterns in a list of strings without 100% similarity?
            Asked 2021-Jan-11 at 11:43

            So I have a list of strings:

            ...

            ANSWER

            Answered 2021-Jan-10 at 22:42

            You can create a custom find function and call it instead of the string.find or string.rfind methods. This function just looks at string parts that has the same length as the pattern. If different lengths can match it has to be extended but it's hard to predict how much.

            Source https://stackoverflow.com/questions/65656079

            QUESTION

            Split string into a list on whitespace, excluding single spaces when the next character is not a dash
            Asked 2020-Dec-16 at 07:34

            I'm scraping a website that has a table of satellite values (https://planet4589.org/space/gcat/data/cat/satcat.html).

            Because every entry is only separated by whitespace, I need a way to split the string of data entries into an array.

            However, the .split() function does not suit my needs, because some of the data entries have spaces (e.g. Able 3), I can't just split everything separated by whitespace.

            It get's trickier, however. In some cases where no data is available, a dash ("-") is used. If two data entries are separated by only a space, and one of them is a dash, I don't want to include it as one entry.

            e.g say we have the two entries "Able 3" and "-", separated only by a single space. In the file, they would appear as "Able 3 -". I want to split this string into the separate data entries, "Able 3" and "-" (as a list, this would be ["Able 3", "-"]).

            Another example would be the need to split "data1 -" into ["data1", "-"]

            Pretty much, I need to take a string and split it into a list or words separated by whitespace, except when there is a single space between words, and one of them is not a dash.

            Also, as you can see the table is massive. I thought about looping through every character, but that would be too slow, and I need to run this thousands of times.

            Here is a sample from the beginning of the file:

            ...

            ANSWER

            Answered 2020-Dec-16 at 06:57

            One approach is to use pandas.read_fwf(), which reads text files in fixed-width format. The function returns Pandas DataFrames, which are useful for handling large data sets.

            As a quick taste, here's what this simple bit of code does:

            Source https://stackoverflow.com/questions/65317704

            QUESTION

            How to control the number of loops with user input?
            Asked 2020-Oct-27 at 06:06

            My question is: how I can define an input code that the user can be entered for example 3, 5, 6, or any number to get an output with 3 letters, 5 letters and etc(according to user input).

            Output for this code is:

            ...

            ANSWER

            Answered 2020-Oct-25 at 17:27

            I think you can put the logic of the inner-most loop in a function and then call that function based on the input. Alternatively, you can try to solve the same problem with recursion, wherein the user-input would define the recursion depth. Initialize a global variable depth and set that to 0. In the first line of the function, increment depth with 1 and every time the function will be called, it's value will be increased. In the base case, set a condition for the depth variable and the input variable to be equal, as soon as the depth variable == the input variable, the recursion will stop.

            Source https://stackoverflow.com/questions/64526182

            QUESTION

            ValueError: not enough values to unpack (expected 2, got 0) in Django
            Asked 2020-Mar-16 at 13:04

            My function doesn't take any arguments but I get this error not enough values to unpack (expected 2, got 0). I can print the values on the terminal but can't be displayed on the browser.

            I am fetching data from two database tables(Postgres) and put it in a select input in Django template.

            This is the method suppose to return the data to be displayed

            ...

            ANSWER

            Answered 2020-Mar-16 at 11:16

            GItems seems to be a variable that's not a map or list, seeing it's initialized from myvars(car). Your for loop expects to unpack both index and value.

            So the gitems variable is not iterable

            Source https://stackoverflow.com/questions/60703413

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install gcat

            You can download from https://bitbucket.org/gawbul/gcat by clicking get source and downloading in the preferred format. We recommend zip for the purposes of the installation instructions in this document. You can also download from https://github.com/gawbul/gcat and click on the ZIP icon to download the source. Additionally you can checkout the code from bitbucket using Mercurial by running. Or from github by running.
            We recommend installing the toolkit on Ubuntu Linux version 10.04+ or OS X 10.5+, as these are the machines it has been tested and developed on. Support for Windows is unlikely in the future. Should you require running this software on a Windows machine, then we recommend downloading VirtualBox from http://www.virtualbox.org and installing BioLinux or Ubuntu as a virtual machine. We may make a virtual machine available with the software preconfigured in the future. To install from source you should simply extract the archive to an appropriate directory for example your home directory i.e. /home/stevemoss or /Users/stevemoss. The * in the following text represents the revision id e.g. daacf7a00ab8.

            Support

            After installing, you can find documentation for this module at the GCAT Wiki.
            Find more information at:

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            CLONE
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            https://github.com/gawbul/gcat.git

          • CLI

            gh repo clone gawbul/gcat

          • sshUrl

            git@github.com:gawbul/gcat.git

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