mlst | : id : Scan contig files against PubMLST typing schemes | Code Analyzer library

 by   tseemann Perl Version: v2.19.0 License: GPL-2.0

kandi X-RAY | mlst Summary

kandi X-RAY | mlst Summary

mlst is a Perl library typically used in Code Quality, Code Analyzer applications. mlst has no bugs, it has no vulnerabilities, it has a Strong Copyleft License and it has low support. You can download it from GitHub.

Scan contig files against traditional PubMLST typing schemes.

            kandi-support Support

              mlst has a low active ecosystem.
              It has 92 star(s) with 28 fork(s). There are 23 watchers for this library.
              It had no major release in the last 12 months.
              There are 18 open issues and 79 have been closed. On average issues are closed in 100 days. There are 3 open pull requests and 0 closed requests.
              It has a neutral sentiment in the developer community.
              The latest version of mlst is v2.19.0

            kandi-Quality Quality

              mlst has no bugs reported.

            kandi-Security Security

              mlst has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

            kandi-License License

              mlst is licensed under the GPL-2.0 License. This license is Strong Copyleft.
              Strong Copyleft licenses enforce sharing, and you can use them when creating open source projects.

            kandi-Reuse Reuse

              mlst releases are available to install and integrate.
              Installation instructions are not available. Examples and code snippets are available.

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            mlst Key Features

            No Key Features are available at this moment for mlst.

            mlst Examples and Code Snippets

            No Code Snippets are available at this moment for mlst.

            Community Discussions


            Apache Commons FTP Passive mode, how to set remote listening port (data stream)
            Asked 2021-Jun-01 at 06:26

            I try to connect with an FTP server with apache-commons-net-3.7.2 (implicit TLS, double factor authentication with client cert + login/password).

            I can authenticate myself, enter in passive mode, but the client doesn't succeed in connecting to the server in order to get data by the data socket.

            I can connect myself, on the same computer, with WinSCP (same settings). I have activated WinSCP logs to see protocol details, and I have adjusted my source code with the same options. I can verify that my protocol is ok with a ProtocolCommandListener. I know that passive mode is required because WinSCP emits PASV command.

            I can see that WinSCP connects to the data socket on port 62564 (I have replaced FTP IP address with XXX)



            Answered 2021-Jun-01 at 06:26

            Your assumption is wrong. You do not set the port. The server tells you what port to connect to.

            For WinSCP:

            2021-01-06 10:25:35.575 227 Entering Passive Mode (192,168,4,122,244,100).
            2021-01-06 10:25:35.575 Connexion à 83.XXX.XXX.XXX:62564...

            Where 62564 = (244 << 8) + 100

            See RFC 959, section 4.1.2. Transfer parameter commands, Page 28.

            The parsing of the PASV response fails, because you are using a wrong code. The _parseExtendedPassiveModeReply is for EPSV. For PASV, use _parsePassiveModeReply. There you will also see the implementation of the above formula:



            extracting the most mentioned from a data
            Asked 2021-Apr-02 at 16:49

            I have a csv data with Tweets text as df['Tweets'] I would like to extract the ten most common words that have @ before them and their frequincies. In other words, I want to know what are the mlst mentions? I also want to plot them in with a bar graph for visualization.

            Thanks for your help.



            Answered 2021-Apr-02 at 16:49

            You can do something like this



            "The server response contains a null character" when connecting to FTP site on port 990 using SSH.NET
            Asked 2021-Jan-20 at 07:22

            I'm trying to use Renci SSH.NET to connect to an FTP site and download files from my C# app. I can successfully connect to the host with FileZilla and WinSCP (on Windows 10 Pro 64), and through an HTTP connection (the host is running CrushFTP), but cannot figure out how to successfully connect from my C# app, using SSH.NET. I'm getting this error:

            The server response contains a null character at position 0x00000004: 00000000 15 03 03 00....A server must not send a null character before the Protocol Version Exchange is complete.

            My take on the documentation from here, is that this problem appears to be an expected error. I've read the information suggested by the documentation at and I "think" I understand that to mean that the host that I'm trying to connect to may not be correctly configured. My question is, since I don't have the ability to change how the host is configured, whether there is a way around this error with the SSH.NET library or am I just at a dead end for using SSH.NET?

            Here's my code - tried to simplify to bare minimum:



            Answered 2021-Jan-20 at 07:22

            Port 990 is used for FTP protocol over implicitly encrypted TLS/SSL connection (aka implicit FTPS). While SSH.NET is an SSH/SFTP library. FTPS and SFTP are completely different things. You cannot use SSH.NET for FTPS.

            The implicit FTPS is obsolete thing. Not all FTP(S) libraries do support it. It's notable not supported by the built-in .NET FTP implementation, the FtpWebRequest.

            For you will have to use a 3rd party library. See Does .NET FtpWebRequest Support both Implicit (FTPS) and explicit (FTPES)?

            Though most FTP servers do support the standard explicit FTPS (over port 21). If your server does, use that, instead of the legacy port 990. See FTPS (FTP over SSL) in C#

            If not, talk to the server administrator to enable it.

            See also Difference between FTP/FTPS/SFTP - Configurable connection to any of them

            A completely different problem that can lead to the same error message: Connecting with SSH.NET to OpenSSH 7.4p1 fails with "The server response contains a null character at position" but works in WinSCP.



            Can connect to FTP using FileZilla or WinSCP, but not with FtpWebRequest or FluentFTP
            Asked 2021-Jan-14 at 08:33

            I am trying to open an FTP connection over SSL in my code. I'm able to connect and list a directory using FileZilla of WinSCP. But when listing the directory through .NET code using FtpWebClient, I get the error

            (425) Can't open data connection

            Since I'm able to connect using FileZilla from the same computer, I'm not sure how to go about troubleshooting this.

            Here's my code



            Answered 2021-Jan-14 at 08:33

            .NET framework does not support TLS/SSL session reuse. If your server requires it (what it looks it does), you cannot use FtpWebRequest nor FluentFTP. Both use the .NET implementation of TLS/SSL.

            You will have to use FTP library that uses own TLS/SSL implementation.

            You can use my WinSCP .NET assembly. Though contrary to FluentFTP, it's not a native .NET library, it has dependencies on an external binary. But that's what makes it working.

            Some references:



            Fail to get remote data (passive mode, TLS implicit, client certificate + login/pwd authentication)
            Asked 2021-Jan-12 at 07:03

            I try to connect with a FTP server with apache-commons-net-3.7.2 (implicit TLS, double factor authentication with client cert + login/password).

            I can authenticate myself, enter in passive mode, but the client doesn't succeed in connecting to the server in order to get data by the data socket.

            I can connect myself, on the same computer, with WinSCP (same settings), I have activated WinSCP logs to see protocol details, and I have adjusted my source code with the same options. I can verify that my protocol is OK with a ProtocolCommandListener.

            WinSCP logs are below

            Connect and browse root directory
            Chiffrement : Chiffrement SSL/TLS implicite
            Version min TLS/SSL : TLS 1.0
            Version max TLS/SSL : TLS 1.2
            Réutiliser l'ID de session TLS/SL pour le connexions de données activé
            (reuse ssl session id for data connexions activated)

            I use the same certificate as for my Java (PFX format with WinSCP, JCEKS for Java, which is Java 8)



            Answered 2021-Jan-07 at 21:02

            Thanks to Martin Prikryl
            There was two problems :

            1. apache-commons-net doesn't manage ssl session reuse. There are some hacks documented (see comments)
            2. don't call sendCommand("xxx") but use api verbs (eg. execProt, not sendCommand"PROT", or enterLocalPassiveMode, not sendCommand("PASV")



            generating a list but only the first index showed
            Asked 2020-Oct-24 at 19:55

            i want to generate a list, in which only odd number get factorial application. However only the first number will be execute, can you help me? Thanks.



            Answered 2020-Oct-24 at 19:55

            You should change apply_if function.



            Java FTPSClient TLS FTP connection to pureftp server hangs on storeFile
            Asked 2020-Sep-27 at 09:34

            I'm trying to store a file on a pureftp server using the following java code using



            Answered 2020-Sep-27 at 09:34

            It turns out that if I switch the dependency from



            InvocationTargetException on inflating a view in Adapter class
            Asked 2020-Jun-11 at 02:13

            I am trying to inflate a custom recyclerview but the problem is every time i am trying to inflate a xml file in the onCreateViewHolder(), it is generating an exception of InvocationTargetException. I have also applied some solutions already available but the problem remains the same. I am not getting where i am lacking.



            Answered 2020-Jun-10 at 15:55

            The backgroundTint value cannot be found



            Python code to check if a point is inside or outside a Cuboid
            Asked 2020-Jan-20 at 19:22

            for a particular purpose, I have to find whether a given point is inside a cuboid or not. With help from this link ( ). I have written a prototype code which can check if the points are inside a cuboid or not.

            ( for the mathematics of this, please refer this link.)

            for this, we should define the 3 mutually perpendicular axes of the cuboid.

            Here is my code



            Answered 2020-Jan-20 at 19:22

            If your cuboid is axis-aligned, such computations are overkill - it's enough to compare coordinates.

            For arbitrary orientation you have to modify code slightly. Remove strange construction



            if string in line and next line
            Asked 2020-Jan-07 at 13:49

            I have a xml string (converted to a list) and I am looking for a specific string. I want to do stuff only if this string has the same specific string in the next line in the list.

            xml (called diff):



            Answered 2019-Dec-17 at 14:42

            What I did, just copied your xml content into a txt file and then read it as a string


            Community Discussions, Code Snippets contain sources that include Stack Exchange Network


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            You can download it from GitHub.


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