abricate | Mass screening of contigs for antimicrobial and virulence | Genomics library

by tseemann Perl Version: v1.0.0 License: GPL-2.0

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kandi X-RAY | abricate Summary

abricate is a Perl library typically used in Artificial Intelligence, Genomics applications. abricate has no bugs, it has no vulnerabilities, it has a Strong Copyleft License and it has low support. You can download it from GitHub.

Mass screening of contigs for antimicrobial resistance or virulence genes. It comes bundled with multiple databases: NCBI, CARD, ARG-ANNOT, Resfinder, MEGARES, EcOH, PlasmidFinder, Ecoli_VF and VFDB.

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Quality

Security

License

Reuse

Support

abricate has a low active ecosystem.

It has 270 star(s) with 68 fork(s). There are 27 watchers for this library.

It had no major release in the last 12 months.

There are 58 open issues and 134 have been closed. On average issues are closed in 29 days. There are 3 open pull requests and 0 closed requests.

It has a neutral sentiment in the developer community.

The latest version of abricate is v1.0.0

Quality

abricate has 0 bugs and 0 code smells.

Security

abricate has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

abricate code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

abricate is licensed under the GPL-2.0 License. This license is Strong Copyleft.

Strong Copyleft licenses enforce sharing, and you can use them when creating open source projects.

Reuse

abricate releases are available to install and integrate.

Installation instructions are not available. Examples and code snippets are available.

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abricate Key Features

No Key Features are available at this moment for abricate.

abricate Examples and Code Snippets

No Code Snippets are available at this moment for abricate.

Community Discussions

Trending Discussions on abricate

concatenation of ABRICATE csv results in snakemake file

QUESTION

concatenation of ABRICATE csv results in snakemake file

Asked 2020-Mar-29 at 04:42

I would like to concatenate multiple csv files results from the program ABRICATE (github.com/tseemann/abricate) into a single csv file.

The following snakefile runs through a folder of fasta files producing an individual csv for each fasta. I would like to concatenate those results into a single csv file, but not sure how to frame "rule all".

Any suggestions?
Below is my working snakefile. Thanks

...

ANSWER

Answered 2020-Mar-29 at 04:42

If the files have no headers and the fields match, the concatenation may be done by cat command:

Source https://stackoverflow.com/questions/60901275

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install abricate

You can download it from GitHub.

Support

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