snippy | Rapid haploid variant calling and core genome alignment | Genomics library

 by   tseemann Perl Version: v4.6.0 License: GPL-2.0

kandi X-RAY | snippy Summary

kandi X-RAY | snippy Summary

snippy is a Perl library typically used in Artificial Intelligence, Genomics applications. snippy has no bugs, it has no vulnerabilities, it has a Strong Copyleft License and it has low support. You can download it from GitHub.

Rapid haploid variant calling and core genome alignment.

            kandi-support Support

              snippy has a low active ecosystem.
              It has 384 star(s) with 109 fork(s). There are 29 watchers for this library.
              It had no major release in the last 12 months.
              There are 157 open issues and 381 have been closed. On average issues are closed in 79 days. There are 7 open pull requests and 0 closed requests.
              It has a neutral sentiment in the developer community.
              The latest version of snippy is v4.6.0

            kandi-Quality Quality

              snippy has 0 bugs and 0 code smells.

            kandi-Security Security

              snippy has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.
              snippy code analysis shows 0 unresolved vulnerabilities.
              There are 0 security hotspots that need review.

            kandi-License License

              snippy is licensed under the GPL-2.0 License. This license is Strong Copyleft.
              Strong Copyleft licenses enforce sharing, and you can use them when creating open source projects.

            kandi-Reuse Reuse

              snippy releases are available to install and integrate.
              Installation instructions, examples and code snippets are available.
              It has 24 lines of code, 0 functions and 1 files.
              It has low code complexity. Code complexity directly impacts maintainability of the code.

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            snippy Key Features

            No Key Features are available at this moment for snippy.

            snippy Examples and Code Snippets

            No Code Snippets are available at this moment for snippy.

            Community Discussions


            what happens when you define a function?
            Asked 2020-Dec-11 at 00:49

            I found a beautiful script for making a snipp from actual window here on Stackoverflow and I'd love to use it in the personal application that I'm creating. But I think I'm missing something big here and I don't understand why it's not working.



            Answered 2020-Dec-11 at 00:06


            generate a .tab file with filenames and paths separated by tab
            Asked 2020-Sep-15 at 09:45

            I have just started learning linux CLI. I am using snippy tool for comparing multiple files that require a .tab format file. This tab formatted file should be consisting of the paths and filenames separated by tab (\t).

            I have run this two commands separately to generate a list of filenames and paths.



            Answered 2020-Sep-15 at 09:45


            PYQT5 screen snipping program leaves left over square after snip
            Asked 2020-May-30 at 02:52

            I'm attempting to resolved an issue with a left over square after my snipping program is done snipping. I would like to delete any instance of the square drawing after the initial snip


            Steps to replicate:

            Select "mode" > select "snip" > drag rectangle and take a screen snip

            Select "mode" > select "snip" > now observe the previous snip still has the rectangle on the screen (as shown in the picture)

            My code:



            Answered 2020-May-30 at 02:52

            You have to reset self.start_point and self.end_point:



            Screen Snipping Program - Transparent Snipping Area
            Asked 2020-May-29 at 06:31

            I'm in the process of converting my successful screen snipping program from Tkinter to PYQT5. My question is how to create a fully transparent snipping area (a dynamically updating square region would be nice). The outside of the square will be semi-opaque. I've looked all over stack overflow and the internet and could not find an example of this (others are not a fully transparent drawing window). I've attached my code and a picture example of what I am looking for. The "SnippingWidget" is the class that does the snipping logic.



            Answered 2020-May-29 at 06:31

            You have to use QPainterPath to subtract the rectangle from the window with the selected rectangle:



            how to get the average of values for one column based on another column value in python (pandas, jupyter)
            Asked 2020-Mar-02 at 10:47

            the image shows the test dataset I am using to verify if the right averages are being calculated.

            I want to be able to get the average of the corresponding values in the 'G' column based on the filtered values in the 'T' column.

            So I set the values for the 'T' coloumn based on which I want to sum the values in the 'G' column and then divide the total by the count to get an average, which is appended to a variable. however the average is not correctly calculated. see below screenshot



            Answered 2020-Jan-29 at 17:08

            If you want the average of column G values when T is between 2 and 7:


            Community Discussions, Code Snippets contain sources that include Stack Exchange Network


            No vulnerabilities reported

            Install snippy

            Ensure you have the desired version:.
            For Linux (compiled on Ubuntu 16.04 LTS) and macOS (compiled on High Sierra Brew) some of the binaries, JARs and scripts are included.


            For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .
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