covid19 | extra time work to investigate SARS | Genomics library

 by   Acellera Python Version: Current License: MIT

kandi X-RAY | covid19 Summary

kandi X-RAY | covid19 Summary

covid19 is a Python library typically used in Artificial Intelligence, Genomics applications. covid19 has no bugs, it has no vulnerabilities, it has a Permissive License and it has low support. However covid19 build file is not available. You can download it from GitHub.

All data available in this repository is provided under the Creative Commons Attribution 4.0 International Public License
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            kandi-support Support

              covid19 has a low active ecosystem.
              It has 4 star(s) with 2 fork(s). There are 3 watchers for this library.
              OutlinedDot
              It had no major release in the last 6 months.
              covid19 has no issues reported. There are no pull requests.
              It has a neutral sentiment in the developer community.
              The latest version of covid19 is current.

            kandi-Quality Quality

              covid19 has no bugs reported.

            kandi-Security Security

              covid19 has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

            kandi-License License

              covid19 is licensed under the MIT License. This license is Permissive.
              Permissive licenses have the least restrictions, and you can use them in most projects.

            kandi-Reuse Reuse

              covid19 releases are not available. You will need to build from source code and install.
              covid19 has no build file. You will be need to create the build yourself to build the component from source.

            Top functions reviewed by kandi - BETA

            kandi has reviewed covid19 and discovered the below as its top functions. This is intended to give you an instant insight into covid19 implemented functionality, and help decide if they suit your requirements.
            • projection of the molecule
            Get all kandi verified functions for this library.

            covid19 Key Features

            No Key Features are available at this moment for covid19.

            covid19 Examples and Code Snippets

            No Code Snippets are available at this moment for covid19.

            Community Discussions

            QUESTION

            Train test split mysql records into views
            Asked 2021-Jun-11 at 09:30

            how do i create two views, one for training data and the other for test data 70:30 split in mySql.

            ...

            ANSWER

            Answered 2021-Jun-11 at 09:30
            CREATE VIEW training_data
            AS
            WITH cte AS ( SELECT Posts.post_content as post_content,
                                 CASE WHEN Posts.post_title like '%covid%corona%covid19%'
                                      THEN 1
                                      WHEN Posts.post_content like '%covid%corona%covid19%' 
                                      THEN 1 
                                      ELSE 0 END AS tag,
                                 ROW_NUMBER() OVER (ORDER BY id) rn
                          FROM Posts )
            SELECT post_content, tag
            FROM cte
            WHERE rn MOD 10 IN (0,1,3,4,6,7,9);
            

            Source https://stackoverflow.com/questions/67934057

            QUESTION

            R - The cumulative number of cases by days since confirmed cases
            Asked 2021-Jun-10 at 13:19

            I need to draw the cumulative number of cases in the remaining days on the line chart, assuming the day when the number of cases reaches 100,000 for the 10 countries I selected. I'm extracting the data for the next dates when the number of cases reaches 100,000, but I don't know how to get the days I need to put on the x-axis. Here is the original question: "c) Draw line graph for the cumulative number of cases by days since 100000th confirmed case"

            I could write the code below:

            ...

            ANSWER

            Answered 2021-Jun-10 at 13:19

            This should work for you:

            Source https://stackoverflow.com/questions/67921628

            QUESTION

            R - Draw cases per 100k population
            Asked 2021-Jun-09 at 13:27

            I try to draw line COVID cases for each date. I do not have output, the lecturer gave just questions. I solved the question but my problem is the output. It looks weird. Here is the question: "For the ten countries with the highest absolute number of total deaths, draw the following line graphs to visualize whether epidemic has started to slow down and how the growth rate of new cases/deaths differs across those countries. a) Number of new cases at each date (absolute number vs per 100.000 population)"

            Here is my codes:

            ...

            ANSWER

            Answered 2021-Jun-09 at 13:27

            Looking at Belgium, I get total deaths = 25051 from your data file, which tallies exactly with the data here.

            It's obvious that the highest value (by far) for every country occurs "on" the earliest date for the country in the file. Amongst your top ten (I agree with your selection), this is 01Mar2021 for every country apart from Spain, and 28Feb2021 for Spain.

            These two facts lead me to conclude (1) your graphs correctly display the data you have asked them to summarise and that (2) you have a data artefact: the first record for each country contains the cumulative total to date, whereas subsequent dates contain data reported "in the previous 24 hours". I use quotes because different countries have different reporting conventions. For example, in the UK (since August 2020) "COVID-related deaths" are deaths from any cause within 28 days of a positive COVID test. Citation

            Therefore, to get meaningful graphs, I think your only option is to discard the cumulative data contained in the first record for each country. Here's how I would do that:

            Source https://stackoverflow.com/questions/67902604

            QUESTION

            Incorrect yaml format
            Asked 2021-Jun-09 at 12:53
            Title: "Covid19 Digest"
            Section1: "What's new in this issue?"
            Heading 1:
              - "North America"
              - Content:
                - "abc"
                - "def"
              - "Asia-Pacific"
              - Content:
                - "jkl"
                - subcontent:
                  - "apples"
                  - "oranges"
                  - "oranges"
                - "mnop"
            
            ...

            ANSWER

            Answered 2021-Jun-09 at 12:41

            If you want `"Heading1" to be a top-level key, you need to dedent it

            Source https://stackoverflow.com/questions/67904259

            QUESTION

            R- Finding cumulative values
            Asked 2021-Jun-08 at 14:13

            I have COVID data. It gives the number of cases and deaths of European countries on certain dates. I need to select 10 countries and show the cases after the 1000th confirmed case by drawing a line. Countries are listed under a column titled countries, number of cases under a column titled case, number of deaths under a column titled deaths, and dates under a column titled date. The problem is that I don't know how to get the 1000th confirmed case numbers of countries and the number of cases thereafter. Here is the question: "c) The cumulative number of cases of 10 countries by days since 1000th confirmed case"

            Here is my trying code:

            ...

            ANSWER

            Answered 2021-Jun-08 at 14:13

            QUESTION

            TypeError: slice indices must be integers or None or have an __index__ method (Albumentations/NumPy)
            Asked 2021-Jun-03 at 05:20

            Hi everyone can you please help me i'm getting this bug with random crop augmentation. TypeError: slice indices must be integers or None or have an index method

            Code is below.

            ...

            ANSWER

            Answered 2021-Jun-03 at 05:20

            I think the error is in this line:

            Source https://stackoverflow.com/questions/67812484

            QUESTION

            How to convert HTML into dataframe by using json with either r or python?
            Asked 2021-May-28 at 16:42

            I am creating a map and its data seems to be available in html on this weblink: https://jsfiddle.net/BlackLabel/jaL7q5x3/2/

            (I am not really a programmer so not sure if that's html or java or json but it says html so taking it as html but it looks java/json to me)

            As I am unable to use this directly into highcharts hcmap() function from r library. So, I tried to copy & paste this html into a .txt file and tried to read it in python as json object so that I can convert it into a dataframe object but it failed.

            ...

            ANSWER

            Answered 2021-May-28 at 16:42

            The data you are looking to extract is JSON data. It is however not completely valid JSON. You'll have to clean it up a little bit. You can use sites like jsonlint.com to validate JSON data.

            The issues with the JSON data are (1) at the beginning, you need to remove the part that says "Highcharts.maps["countries/in/custom/in-all-disputed"] =" up until the first curly bracket {; (2) three lines have a "comment" with two slashes followed by four digits, like this "// 0000". These need to be removed before ingesting the JSON data (I see "// 8440" twice and "// 1227" once).

            After doing this you can extract the data from the txt file in R with the jsonlite package.

            Source https://stackoverflow.com/questions/67742203

            QUESTION

            Selenium: "ElementClickInterceptedException", Element is not clickable because another element obscures it
            Asked 2021-May-26 at 19:14

            I am trying to click on the "CSV" button at this website https://covid19-vaccine-report.ecdc.europa.eu/#6_Reported_data using selenium.

            However, with the below code I am receiving the error selenium.common.exceptions.ElementClickInterceptedException: Message: Element is not clickable at point (464,600) because another element obscures it.

            The code:

            ...

            ANSWER

            Answered 2021-May-26 at 13:46

            Try the following: scroll into view some other element that is below the desired button so that the desired button will not be covered by the cookies banner and then try clicking the button.

            Source https://stackoverflow.com/questions/67705552

            QUESTION

            How to read nested json file and pull information from dataframe inside dataframe in r?
            Asked 2021-May-26 at 07:50

            I am reading a json file as a response from api which is nested and when I look at them in a dataframe/table structure format then there are data frame under data frame.

            I have saved file at github location.

            ...

            ANSWER

            Answered 2021-May-26 at 07:50

            You can unnest the sessions variable and the slots variable within it to get a long dataframe.

            Source https://stackoverflow.com/questions/67700631

            QUESTION

            Javascript need website URLS shortening down
            Asked 2021-May-22 at 21:08

            I am fetching all the websites links and putting them into a array where I will eventually compare them with a JSON list. I need the websites to be shortened down to

            Examples (What I'm trying to get the array to look like)

            • google.com
            • computers.intercom-clicks.com
            • mad-websites.ru
            • just-eat.com

            Example links

            My code currently only shortens some websites down while others are still the same. It will also remove any duplicates.

            ...

            ANSWER

            Answered 2021-May-22 at 21:08

            Is this what you look for?

            Source https://stackoverflow.com/questions/67653919

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install covid19

            You can download it from GitHub.
            You can use covid19 like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.

            Support

            For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .
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          • HTTPS

            https://github.com/Acellera/covid19.git

          • CLI

            gh repo clone Acellera/covid19

          • sshUrl

            git@github.com:Acellera/covid19.git

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