galig | A graph aligner - | Genomics library

by AlgoLab Python Version: v1.1.7 License: GPL-3.0

X-Ray Key Features Code Snippets Community Discussions(2)Vulnerabilities Install Support

kandi X-RAY | galig Summary

galig is a Python library typically used in Artificial Intelligence, Genomics applications. galig has no bugs, it has no vulnerabilities, it has a Strong Copyleft License and it has low support. However galig build file is not available. You can download it from GitHub.

A graph aligner

Support

Quality

Security

License

Reuse

Support

galig has a low active ecosystem.

It has 22 star(s) with 10 fork(s). There are 7 watchers for this library.

It had no major release in the last 12 months.

There are 8 open issues and 8 have been closed. On average issues are closed in 73 days. There are 2 open pull requests and 0 closed requests.

It has a neutral sentiment in the developer community.

The latest version of galig is v1.1.7

Quality

galig has 0 bugs and 0 code smells.

Security

galig has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

galig code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

galig is licensed under the GPL-3.0 License. This license is Strong Copyleft.

Strong Copyleft licenses enforce sharing, and you can use them when creating open source projects.

Reuse

galig releases are available to install and integrate.

galig has no build file. You will be need to create the build yourself to build the component from source.

Installation instructions are not available. Examples and code snippets are available.

galig saves you 1041 person hours of effort in developing the same functionality from scratch.

It has 2362 lines of code, 129 functions and 20 files.

It has high code complexity. Code complexity directly impacts maintainability of the code.

Top functions reviewed by kandi - BETA

kandi has reviewed galig and discovered the below as its top functions. This is intended to give you an instant insight into galig implemented functionality, and help decide if they suit your requirements.

Get the CIGAR
Compute the edit distance between two strings
Return the rank of an integer i
Return the first occurrence of i
Extract introns from a file
Parse a line from a line
Combine two iterables
Check if newIntrons are precomputed
Get all exons close to p
Given a list of introns return a dictionary containing the number of introns
Perform a check on an alignment
Evaluate rMATS
Evaluate rMATS annotations
Evaluate spladder annotations
Evaluate spladder
Evaluate suppa annotations for suppa
Evaluate suppons
Parse unmapped reads
Rewrite the annotation file
Evaluate asgal annotations
Parse the exps_events_file
Split a BAM file into a FASTA file
Evaluate asgal
Parse gene events
Extract the strand from a gtf
Open a gffutils FeatureDB
Parse a line

Get all kandi verified functions for this library.

galig Key Features

No Key Features are available at this moment for galig.

galig Examples and Code Snippets

No Code Snippets are available at this moment for galig.

Community Discussions

Trending Discussions on galig

Add css to JSP on JAX-RS

How to create spring boot project from existing maven project

QUESTION

Add css to JSP on JAX-RS

Asked 2020-Nov-28 at 18:45

I need to add css and js to the jsp files in a jax-rs app running on glassfish5. pom.xml

...

ANSWER

Answered 2020-Nov-28 at 18:45

Static files don't need to be in the WEB-INF folder. We put JSP files in there to protect them from the public. The assets can go straight in the src/main/webapp folder. This is the root where the default servlet will serve the static files.

So let's say you have the following structure

Source https://stackoverflow.com/questions/65051603

QUESTION

How to create spring boot project from existing maven project

Asked 2019-May-22 at 12:52

I have created a maven project in eclipse and I want to deploy it on a server(tomcat I guess). I believe this can be done via spring boot. My question is this: this project has imported several jar files located on my PC and has another project that is in the workspace in its build path. I worry that during the integration(turning it into maven) I might lose all the dependencies. What is generally the best way to import jar files to a project and how to add another project in its build path? Please comment with any other specifications that you need.

This is the pom.xml

...

ANSWER

Answered 2019-May-22 at 12:48

i think you have a bit of a misconception of what spring.boot actually is.

Spring-boot is a complete eco system for building a microservice integrated with a lot of well used java libraries.

Your pom seams to be a fully written application made to be deployed onto an empty tomcat server. Spring-boot is not an empty tomcat, spring-boot is an application/framework that uses tomcat under the hood.

What you need is to go over to http://tomcat.apache.org/ and download the tomcat server and then google how to setup/start tomcat in your choice of IDEA. After that is done you need to open the maven project in your IDEA of choice and deploy it to the tomcat server.

Using eclipse/intellij there are several tutorials on the internet explaining how to install and setup tomcat. And also tonnes of tutorials in how to import maven projects and build and deploy to tomcat.

Source https://stackoverflow.com/questions/56256956

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install galig

You can download it from GitHub.
You can use galig like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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