VIBRANT | Virus Identification By iteRative ANnoTation | Genomics library

by AnantharamanLab Python Version: v1.2.1 License: GPL-3.0

X-Ray Key Features Code Snippets(1)Community Discussions(10)Vulnerabilities Install Support

kandi X-RAY | VIBRANT Summary

VIBRANT is a Python library typically used in Artificial Intelligence, Genomics applications. VIBRANT has no bugs, it has no vulnerabilities, it has a Strong Copyleft License and it has low support. However VIBRANT build file is not available. You can download it from GitHub.

If you find VIBRANT useful please consider citing our manuscript in Microbiome: Kieft, K., Zhou, Z. & Anantharaman, K. VIBRANT: automated recovery, annotation and curation of microbial viruses, and evaluation of viral community function from genomic sequences. Microbiome 8, 90 (2020).

Support

Quality

Security

License

Reuse

Support

VIBRANT has a low active ecosystem.

It has 108 star(s) with 29 fork(s). There are 5 watchers for this library.

It had no major release in the last 12 months.

There are 31 open issues and 46 have been closed. On average issues are closed in 115 days. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of VIBRANT is v1.2.1

Quality

VIBRANT has 0 bugs and 0 code smells.

Security

VIBRANT has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

VIBRANT code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

VIBRANT is licensed under the GPL-3.0 License. This license is Strong Copyleft.

Strong Copyleft licenses enforce sharing, and you can use them when creating open source projects.

Reuse

VIBRANT releases are available to install and integrate.

VIBRANT has no build file. You will be need to create the build yourself to build the component from source.

Installation instructions, examples and code snippets are available.

VIBRANT saves you 1295 person hours of effort in developing the same functionality from scratch.

It has 2908 lines of code, 0 functions and 5 files.

It has low code complexity. Code complexity directly impacts maintainability of the code.

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VIBRANT Key Features

No Key Features are available at this moment for VIBRANT.

VIBRANT Examples and Code Snippets

VIBRANT,Contact

Python

Lines of Code : 13

License : Strong Copyleft (GPL-3.0)

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Community Discussions

Trending Discussions on VIBRANT

How to disable warnings for identifiers prefixed with underscore (_)

How to get specific information from API data from Greenbits using Google Scripts

NestJS Error: Error:Cannot find module './'

How to keep updated array stay same even if page is refreshed in Vuejs?

Is there a way to encapsulate Vuex store inside Vue plugin (its install function)?

Why mobx computed getter doesn't call after change value

Why `overflow-x: visible` not work when overflow-y is scroll

Angular routes not making exact URL

checkbox onclick changing only after refreshing react js

Iteratively push data to Azure Search Index VIA .NET Core console app

QUESTION

How to disable warnings for identifiers prefixed with underscore (_)

Asked 2022-Mar-07 at 16:56

Background and introduction

As a developer in React.js I highly appreciate the automized help I can get from ESLint on code issues such as unused identifiers.

I have a very small example project in a zip file that I use for experimenting with ESLint.

Even without explicit ESLint rules, Visual Studio Code indicates what identifiers are unused by showing them in a less vibrant color.
In the screenshot below, unUsedArgument and unUsedVariable would have been displayed in about the same color as prevToggle, if they had been used.

App.js in writing :

...

ANSWER

Answered 2022-Mar-07 at 16:56

How can I get this exact behavior without scattering ugly ESLint comments all over my JavaScript code?

Just add the rules under the eslintConfig attribute, to make package.json look as follows.

package.json :

Source https://stackoverflow.com/questions/71384606

QUESTION

How to get specific information from API data from Greenbits using Google Scripts

Asked 2022-Mar-03 at 15:14

Been working on a project and finally got it to connect to the API and pull the data, now just just need certain information from the information pulled.

Looking at trying to get just the Quantity total for the item so I place it into a variable and then utilize the information within the script. This is how the information looks when its pull from the API.

...

ANSWER

Answered 2022-Mar-03 at 04:15

Logger.log(response); of your provided script is the showing script, please modify var object = JSON.parse("quantity"); to var object = JSON.parse(response.getContentText());. And please check console.log(object.inventory_items[0].quantity)

Source https://stackoverflow.com/questions/71331646

QUESTION

NestJS Error: Error:Cannot find module './'

Asked 2022-Feb-23 at 19:01

I encountered a error when using NestJS. The console shows 0 error first and then crahsed with the Error: Cannot find module './'. This is similar to the

Error:Cannot find module '../module_name'.

However, for this one, it shows './'. And I tried to delete the node_module and the dist folder and rerun the npm install that was usually used to solve the similar people.

The full error message is:

...

ANSWER

Answered 2022-Feb-23 at 19:01

The problem is I used a model called client. The solution is to rename it to clients since NestJS itself uses the name client. After the name modification, I will need to delete the whole dist folder and run npm rebuild.

Source https://stackoverflow.com/questions/70980821

QUESTION

How to keep updated array stay same even if page is refreshed in Vuejs?

Asked 2022-Feb-14 at 14:10

HelloWorld.vue

...

ANSWER

Answered 2022-Feb-14 at 14:02

On each refresh your app is re-rendered and in HelloWorld.vue you get your data from local file, that's why you get the same array every time.

To render your updated array after refresh you will need to store the data in localStorage or in sessionStorage and if data exists there get that, if not use the data from local file.

State is not remembered on refresh that's why you need to store it somewhere.

If you're planning to use vuex you can save data after refresh with vuex-persistedstate. More info: Vuex state on page refresh

Source https://stackoverflow.com/questions/71112788

QUESTION

Is there a way to encapsulate Vuex store inside Vue plugin (its install function)?

Asked 2022-Jan-28 at 16:20

I have a plugin and this plugin uses Vuex

...

ANSWER

Answered 2022-Jan-28 at 16:20

Vuex plugin uses store option to assign store instance to Vue.prototype.$store, similarly to your own plugin.

If the intention is to use multiple stores, their names shouldn't collide. The key is to name your store object inside plugin something other than $store

Source https://stackoverflow.com/questions/70885696

QUESTION

Why mobx computed getter doesn't call after change value

Asked 2022-Jan-16 at 00:37

I have TestStore and observable property fields.

When I click to any name, i call action changeOneName and change some object inside fields. Computed getter hasError called again and i see console.log("hasError computed");

Why don't I see console.log("valueFields computed"); second time after changing name to 'ErrorName'?

https://codesandbox.io/s/vibrant-lumiere-cv2tp?file=/src/TestStore.js

...

ANSWER

Answered 2022-Jan-16 at 00:35

You only changed name property of the object, not the object itself. And Object.values only dereferences direct values (objects) of your fields object, not the inner things, like name. So computed don't need to rerun because things that were referenced in that computed didn't change.

hasError did rerun because you actually dereference name property inside of it, so when name changes it reruns.

Hope it makes sense.

Source https://stackoverflow.com/questions/70726463

QUESTION

Why `overflow-x: visible` not work when overflow-y is scroll

Asked 2021-Dec-17 at 07:32

codesandbox

Here is my code, I want show the 'pink content' complete, So I set overflow-y: scroll and overflow-x: visible, but the overflow-x is not work well

Is my usage incorrect, or do I still need to adjust the HTML structure?

...

ANSWER

Answered 2021-Dec-17 at 07:32

Your usage/syntax isn't incorrect, but it is unfortunately a specifically disallowed combination.

overflow-x: visible is only compatible with overflow-y: visible (and not with scroll as you're using).

Source: Mozilla overflow-x

Source https://stackoverflow.com/questions/70389430

QUESTION

Angular routes not making exact URL

Asked 2021-Dec-09 at 09:09

Angular routes zapping the parent and can go directly to the child when I'm expecting to give me a 404 page. this is the route of the app module

...

ANSWER

Answered 2021-Dec-07 at 23:22

Try this change to the child route in the navigation module:

Source https://stackoverflow.com/questions/70267975

QUESTION

checkbox onclick changing only after refreshing react js

Asked 2021-Nov-30 at 08:21

i have a accordion with checkboxes inside but when i click on check box doesnot toggle but data is submiited ,after refresh check box is toggled

https://codesandbox.io/s/vibrant-moon-9722j?file=/src/App.js:7492-11534 i have created a codesandbox here checkboxes inside User Defined is working i want the same for rest

the problem is because i am filtering the array based on catagery

...

ANSWER

Answered 2021-Nov-30 at 08:21

Your code is quite unorganized and muddled, but essentially you just need to trigger refetching the data once it is updated. The getData function already does this when the component mounts. Call this function after the successful POST request in the handleCheckClick handler.

Source https://stackoverflow.com/questions/70165262

QUESTION

Iteratively push data to Azure Search Index VIA .NET Core console app

Asked 2021-Oct-12 at 06:48

https://docs.microsoft.com/en-us/azure/search/search-get-started-dotnet#2---load-documents

I was following this documentation to upload the documents to the index programmatically, however they hard code in each document like so:

...

ANSWER

Answered 2021-Oct-12 at 06:48

Solution was actually quite trivial.

Simply take your SearchClient and index the documents with a batch created from your List of objects. See below:

Source https://stackoverflow.com/questions/69306756

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install VIBRANT

There are two different routes to downloading VIBRANT: Anaconda install or GitHub clone/download. Alternatively you can use the CyVerse Discovery Environment open source web server.