PubData | Smart search engine for all bioinformatics databases | Database library
kandi X-RAY | PubData Summary
kandi X-RAY | PubData Summary
PubData is a search engine and file retrieval system for all bioinformatics databases worldwide. PubData searches biomedical FTP data in a user-friendly fashion similar to how PubMed searches biomedical literature. PubData is hosted as both a web application and a standalone graphical user interface (GUI) software program, while PubMed is hosted as an online web server. PubData is built on novel network programming and natural language processing algorithms that can patch into the FTP servers of any user-specified bioinformatics database, query its contents, and retrieve files for download. PubData is written in the Python programming language (specifically, Django and PyQt4). PubData can remotely search, access, view, and retrieve files from the deeply nested directory trees of any major bioinformatics database via a local computer network. By assembling all major bioinformatics databases under the roof of one software program, PubData allows the user to avoid the unnecessary hassle and non-standardized complexities inherent to accessing databases one-by-one using an Internet browser. More importantly, it allows a user to query multiple databases simultaneously for user-specified keywords (e.g., human, cancer, transcriptome). As such, PubData allows researchers to search, access, view, and download files from the FTP servers of any major bioinformatics database directly from one centralized location. By using only a GUI or web application, PubData allows the user to simultaneously surf multiple bioinformatics FTP servers directly from the comfort of their local computer. Please cite: "Khomtchouk et al.: 'PubData: search engine for bioinformatics databases worldwide', 2016: within any source that makes use of any methods inspired by PubData.
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Top functions reviewed by kandi - BETA
- Helper function to traverse a single file
- Recursively walk recursively
- Recursively walk directory
- List the contents of a directory
- Checks the server state
- Process the dispatcher
- Exit the server
- Double clicked slot
- Add an item to the list
- Update the ftp command
- Enable the download button
- Updates the status of an ftp server
- Refiner of words
- Create a JSON file with the tag
- Start manual update
- Create a wordnet file
- Stop the unix daemon
- Start the service
- Create the recommender system tables
- Start a Unix daemon process
- Create the server names table
- Start the server
- Update all servers
- Add a new server
- Create the WordNet table
- Creates the database
PubData Key Features
PubData Examples and Code Snippets
Community Discussions
Trending Discussions on PubData
QUESTION
This is the code in serverside:
...ANSWER
Answered 2020-Dec-07 at 09:46in util.py the ip should be public not private
QUESTION
I'm trying to add a key-value pair to an object using useState
inside map
function. However, the spread operation in setContainer({...container, [data.pk]: data.name});
seems to be ineffective.
The code snippet below exactly illustrates the problem that I'm trying to solve. In fact, in my original code container
is declared at another ContextProvider component and referenced using useContext
, but I replaced it with useState
for simpliticy.
I guess it has to do with the asynchronous nature of setState
hook, but I don't fully understand what's going on under the hood.
Please let me know what is causing this issue and how to yield the outcome I expected. Thank you.
...ANSWER
Answered 2020-Jun-26 at 15:34You're right, it's because of asynchronous nature of setState
hook, it basically runs in batch.
From react docs:
setState() does not immediately mutate this.state but creates a pending state transition. Accessing this.state after calling this method can potentially return the existing value. There is no guarantee of synchronous operation of calls to setState and calls may be batched for performance gains.
You can create an object first and set it once the loop is completed. Also you shouldn't use map here. Since you're not creating a new array.
QUESTION
I'm passing data to my FlatList using the following code
...ANSWER
Answered 2020-May-08 at 07:18You can sort Data Source State and re-render FlatList, but it's better to do all calculations before rendering data.
QUESTION
My main App component calls in a JSON object of venues with their lat / long data.
I am rendering this JSON object out using FlatList and this all works fine. The app is also pulling the device's location so that I can sort this data into distance sorted information.
I'm currently trying to modify this JSON object to add in the distance from the device to the venue and put this back into the FlatList but this seems to be throwing an infinite re-render loop and I don't actually think it's able to trigger my distance checks.
This is my component here. I've commented out the distance work which I thought was the cause but it's still appearing to throw a re-render infinite loop
...ANSWER
Answered 2020-Apr-30 at 07:45Your useEffect
in Fulllist
is being causing the re-renders.
To make it run only once when component is mounted (like componentDidMount
lifecycle), add an empty dependency array as a second parameter
QUESTION
I'm trying to pass around a public key from my iPhone to other parties, however I am unable to use the output from iOS.
...ANSWER
Answered 2018-Apr-23 at 14:15I havent quite found the answer to the question as I still don't know what exactly the output is that Apple provides, however, I came up with a solution found in this key import export manager.
QUESTION
I have a collection in Firestore with the following structure:
...ANSWER
Answered 2019-Mar-24 at 16:17QUESTION
So here is the problem that I have been going crazy with. I have an app that uses Realm as its Database. I have used Realm in the past with tableviews and it works properly. I can't seem to get the textField data that I saved to load into my view on viewDidLoad. With tableViews there is a reloadData method, but that isn't the case with textFields. I need the data that is in my data base to load into the view on viewDidLoad and I have confirmed several times that data has been saved and is sitting in the dataBase just waiting to load into the view, but it will not load.
...ANSWER
Answered 2018-Nov-15 at 13:31Thanks to Mrkrisher on Discord here is the answer on how to display the last saved textViews and textFields from Realm into your viewDidLoad
QUESTION
I am currently completing a piece of coursework whereby I need to parse an XML file using android and display its data in a useful format on an android phone.
I have used XmlPullParser and have successfully parsed the file into a listView. Here is the result:
To improve the layout above I have set the program to display the title alone (i.e. A78 Seamill etc) and when the user clicks on the title I would like info relating to the works to appear as a drop down.
In my MainActivity.java class I have a setOnItemClickListener that looks like the following:
...ANSWER
Answered 2018-Mar-10 at 04:26You should use a RecyclerView instead of a ListView. Then you will have ItemAnimator available to handle the insertion animations. Then all you have to do is call notifyItemInserted to produce the desired effect.
Tutorial: http://frogermcs.github.io/recyclerview-animations-androiddevsummit-write-up/
QUESTION
I am completely stuck, and I feel like it's a simple issue too. Basically, I have two strings pubKey
and privKey
in one script called WalletGen.cs
and I want to display them in Loader.cs
. In my search for an answer, all I could find is how to do it in Unity, which doesn't exactly help since I'm not using Unity.
Here is the code for WalletGen.cs
ANSWER
Answered 2018-Mar-07 at 05:00As your code stands you cannot access pubKey or privKey because they exist only in the scope of the method WalletHash
.
To expose them you could return them from WalletHash
, eg.
QUESTION
I'm having a problem when I apply a to my xml document.
The extract of XML is:
...ANSWER
Answered 2017-Jul-10 at 18:21It seems that your (EDIT: see below) templates don't copy attribute values correctly.
So add an identity template
Community Discussions, Code Snippets contain sources that include Stack Exchange Network
Vulnerabilities
No vulnerabilities reported
Install PubData
You can use PubData like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.
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