CheckM | microbial genomes recovered from isolates , single cells | Genomics library
kandi X-RAY | CheckM Summary
kandi X-RAY | CheckM Summary
Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes
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Top functions reviewed by kandi - BETA
- Print a summary of the gene counts
- Return the selected marker set
- Return the number of markers in this set
- An iterator over the marker sets
- Parse options
- Get bin ids from outdir
- Find marker genes in the genome
- Calculate genome statistics for each bin
- Return a dictionary of gene positions for each chromosome
- Worker thread
- Return a formatted HTML string
- Parse GFF file
- Label extents
- Stores the results in a file
- Make a list of all the kers in the corpus
- Calculate the sequence stats for each gene
- Report the progress of the bin stats
- Create a dictionary of models for each bin
- This method creates the MSA algorithm for each marker
- Format an action invocation
- Pull the progress of each bin
- Updates the manifest in sourceManifest
- Find markers from taxon
- Plot the contigage of the image
- Calculate statistics for each scaffold
- This method extracts the HMMs from a BAM file
CheckM Key Features
CheckM Examples and Code Snippets
Community Discussions
Trending Discussions on CheckM
QUESTION
I created a pylint plugin. I want just this plugin to only run on modules that have a very specific name. For example, only run the following UniqueReturnChecker if the file is named checkme.py
ANSWER
Answered 2022-Feb-08 at 17:54I ended up doing the following which is working great:
QUESTION
Spoiler; I'm completely new to jQuery/Javascript.
I have a boolean field CheckMe and an input field textField.
If textField is empty, CheckMe should not be shown else it should (this means if goes from not-empty to empty CheckMe should be hidden right away again). I want to parse a delay, say 500 ms, i.e CheckMe is shown if text is not empty and after 500 ms of the last keypress
I have tried using the debounce function from this SO answer (see my implementation below), but the problem is, CheckMe is also first hidden after 500 ms of textField being empty
ANSWER
Answered 2021-Apr-06 at 09:03The reason the attempt with if () { debouce(()={}); } else { immediate(); } doesn't work is due to how event handlers store the function and how debounce stores its timer.
When you run .on("input", function() { }) that function definition is stored within the event handler, ready to run. However with debounce, that's not what is being done, instead it's:
QUESTION
I'm writing a rock paper scissors GUI application and in one of my JPanels, I have a JLabel. This JLabel is supposed to say Rock for one second, then Paper for one second and then Scissors for one second. It's so far only showing the JLabel text for Shoot at the end. I can't seem to figure out why. Can anyone help?
Code:
...ANSWER
Answered 2020-Dec-24 at 06:10Use a [Swing] Timer.
Try the following.
QUESTION
I am implementing NGRX in my Angular 10 application and seem to have a problem with calling the reducer. I have created a checkbox in the app component. I am trying to maintain it's toggle state. I have created an action and reducer. I am not sure why the reducer is not getting called. I have written a console.log in the reducer which doesn't seem to fire. I haven't used strong typing of Action names but have ensured the names match.
app.module
...ANSWER
Answered 2020-Oct-14 at 08:16I think you just need a slight change to app.module.ts when registering the reducer
QUESTION
I have tried every goddamn thing, I cant get this to work. I want the bot to react with a checkmark to the embed when I write the command, but with everything that I've tried I get this string error. I have now tried for 2 hours with no luck. Please help me. I am using discord.py.
...ANSWER
Answered 2020-Sep-15 at 18:24get_emoji is for getting an emoji by ID, so it is returning None and that is causing your error in add_reaction
You could just put the check emoji straight into add_reaction, but I recommend adding the reaction by unicode representation:
QUESTION
I am training an AI to write a book using TensorFlow 1.14 and python 2.6.7. Whenever I run my training python code, I get the error message UnicodeDecodeError: 'charmap' codec can't decode byte 0x9d in position 36188: character maps to I have reinstalled TensorFlow and python as well as searched the forums to try and find an answer. The traceback leads me to a file called cp1252.py in the encodings folder
The code I'm running is
...ANSWER
Answered 2020-Aug-20 at 15:54So it turns out there was a weird character in the text file. All I had to do was replace all the weird symbols with the correct symbol. Thanks for all he help!
QUESTION
Below codes hide and unhide input type...., I need to hide and unhide combobox (select) what can I change there? I tried but there is no luck
...ANSWER
Answered 2020-May-10 at 08:31This selector is not correct: .text[type="select"], it should be replaced with : select.text .
Please note that you have some mistakes in your HTML: the same id cannot be used several times, and there is an extra td tag ( instead of >).
Your Javascript can also be simplified.
QUESTION
let allS = [1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22
,23,24,25,26,27,28,29,30,31,32,33,34,35,36]
var emp = db.collection('BookedTicketData').get().then((snapshot) => {
snapshot.docs.forEach((doc) => {
data = doc.data();
bseat = data.AllSeat
console.log(bseat) //(2) [33, 34]
})
return bseat;
}).then((s) => {
allS.filter(n => {
if(s.includes(n)){
console.log("n -> " + n)
console.log("s -> " + s) // s -> 33,34
html += `
${n}
`
}
else{
html += `
${n}
`
}
});
})
document.getElementById('loader').innerHTML = html;
ANSWER
Answered 2020-May-04 at 08:15Here you need to add your loader html after the async operation.
Also the checkbox onchange events should be added once the checkboxes are mounted into the DOM. That means after setting the innerHTML. Otherwise jQuery wouldn't be able to find your checkboxes inside the page.
You can change your code as below.
QUESTION
I am trying to use the same user control in 2 different Windows. The goal is that if a control in the user control is changed, it will be reflected in the other window that is using the same user control. My understanding is that they are not "syncing", because each window has their own instance of the user control. How can I make both either use the same instance or sync between each other?
To explain better what I need help with, I created a simple project and created 2 xaml windows -- MainWindow and SecondWindow. I also created a user control called CommonUC.
In the MainWindow, I also added a button that opens the SecondWindow when clicked. Is there a way to reflect the change of the checkbox in MainWindow if changed in SecondWindow?
MainWindow.xaml:
...ANSWER
Answered 2020-May-02 at 08:53Ideally the two windows should have a separate instance of user control and that is being reflected in your example as well. However, if you need to sync the checkbox state of main window with the checkbox state of second window, you can do that with either of the following approach.
1.) Follow MVVM pattern which is recommended pattern for WPF applications and then bind both the views (MainWindow and SecondWindow) with same model. However, I won't suggest this approach as in future, if you need to add additional logic in any view, it will make your model unmaintainable and model will break single responsibility design principle as well.
2.) Use EventAggregator pattern wherein your main window will subscribe to checkbox state change event from Second Window. And Second window will publish the state change event as soon as its checkbox state changes.
The second approach is recommended for WPF application as it will make sure that each component in your application is decoupled and has single responsibility
Community Discussions, Code Snippets contain sources that include Stack Exchange Network
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Install CheckM
You can use CheckM like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.
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