STRetch | detecting STR expansions from short-read sequencing data | Genomics library

by Oshlack Python Version: v0.4.0 License: MIT

X-Ray Key Features Code Snippets Community Discussions(10)Vulnerabilities Install Support

kandi X-RAY | STRetch Summary

STRetch is a Python library typically used in Artificial Intelligence, Genomics applications. STRetch has no bugs, it has no vulnerabilities, it has a Permissive License and it has low support. However STRetch build file is not available. You can download it from GitHub.

Method for detecting short tandem repeat expansions from short-read sequencing data. STRetch requires paired end reads to work. It is primarily intended for use on whole genome sequencing data, but can also be run on exome or other targeted sequencing data, although size estimates should be interpreted with caution. Please see the STRetch user guide for installation and usage instructions.

Support

Quality

Security

License

Reuse

Support

STRetch has a low active ecosystem.

It has 53 star(s) with 12 fork(s). There are 5 watchers for this library.

It had no major release in the last 12 months.

There are 6 open issues and 25 have been closed. On average issues are closed in 72 days. There are 2 open pull requests and 0 closed requests.

It has a neutral sentiment in the developer community.

The latest version of STRetch is v0.4.0

Quality

STRetch has no bugs reported.

Security

STRetch has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

License

STRetch is licensed under the MIT License. This license is Permissive.

Permissive licenses have the least restrictions, and you can use them in most projects.

Reuse

STRetch releases are available to install and integrate.

STRetch has no build file. You will be need to create the build yourself to build the component from source.

Top functions reviewed by kandi - BETA

kandi has reviewed STRetch and discovered the below as its top functions. This is intended to give you an instant insight into STRetch implemented functionality, and help decide if they suit your requirements.

Estimate locus counts for each chromosome
Detect the read length from a BAM file
Normalise a sequence of sequences
Returns a list of all possible combinations of the input DNA
Perform circular permuting circular permutations
Return random letters
Write decoys from decoys to outstream
Parse command line arguments
Parse a bed file
Parse distribution file
Find the closest value in array

Get all kandi verified functions for this library.

STRetch Key Features

No Key Features are available at this moment for STRetch.

STRetch Examples and Code Snippets

No Code Snippets are available at this moment for STRetch.

Community Discussions

Trending Discussions on STRetch

Inner sub sub menus is not displaying

Align item to full parent's width minus margin

Picture changing when it shouldn't

Filtering a list based on sed and awk command, multiple delimiter

Material-ui 4.11.4 - Grid: items in column require container direction='row' to display correctly (??)

Is there a reason on why its not skipping to the else (Selenium)?

stack children is overflowing on image

HTML challenge - Time slots

Why does VS Code consider an import valid but WebPack does not?

How do I center an image with a width less than 100%?

QUESTION

Inner sub sub menus is not displaying

Asked 2021-Jun-16 at 02:24

I'm using collapse list unstyled class for showing submenus.In that sub sub menus are not showing, only first submenu is displaying but not the second one.

...

ANSWER

Answered 2021-Jun-16 at 02:24

You need to make sure you include jQuery with bootstrap. You can add everything by adding this to your html:

Source https://stackoverflow.com/questions/67995393

QUESTION

Align item to full parent's width minus margin

Asked 2021-Jun-15 at 16:01

How can I stretch my subview across 100% width of its parent, minus 20px margin on each side? In other words, I need it to fill the width of the parent, with 20px open on each side.

I know in React-Native I can use width: '80%' to make my subview's width relative to that of its parent, but then it's not always precisely 20px on the sides. I also know that I can use alignSelf: 'stretch', however that is not working for me - it has unexpected / unreliable results. I don't want to use Dimensions, as the parent will not always be the device's screen, so Dimensions.get('window').width is inadequate for this problem.

What other options do I have?

...

ANSWER

Answered 2021-Jun-15 at 16:01

Use nested View. You can try here: https://snack.expo.io/@vasylnahuliak/stackoverflow-67989491

Source https://stackoverflow.com/questions/67989491

QUESTION

Picture changing when it shouldn't

Asked 2021-Jun-15 at 11:53

I am trying to build a cinema app with flutter. The structure is as follows:

in each city there are a bunch of cinemas
in a cinema there are a bunch of showrooms(salle in french)
in a showroom(salle in french) there are five display sessions or projections, these projections are of the same film.

because the projections are of the same movie (a showroom displays the same movie in different time(e.g projections) by design), when I click on any of the projections in a showroom I should have the same posture of the same film, not a different posture in each projection.

However I get a different film posture in each projection, and I don't know what is causing this.

I am using a rest api that I created with Spring, and I am certain that the problem is not from my back-end because I am using it in an angular web app and it's working perfectly.

This is a layout of my application

this is what happened when I click on two projection of the same showroom( notice that the posture changes when it shouldn't.

and here is the code of the showroom page (salles-page.dart)

...

ANSWER

Answered 2021-Jun-15 at 11:53

Problem related to back-end and have nothing to do with Flutter.

Source https://stackoverflow.com/questions/67953351

QUESTION

Filtering a list based on sed and awk command, multiple delimiter

Asked 2021-Jun-14 at 08:49

I need help in this issue. I have some files in a folder and I want to list it, but I want to list only the main Cours-name.

...

ANSWER

Answered 2021-Jun-14 at 08:27

here is finelly what i wanted

Source https://stackoverflow.com/questions/67963150

QUESTION

Material-ui 4.11.4 - Grid: items in column require container direction='row' to display correctly (??)

Asked 2021-Jun-14 at 08:10

I want to have several div's in column, centered on the page axis and stretched in width as much as the div width allows it. I am using the component (both container and item) of material-ui 4.11.4 (latest version):

In the previous image all Grid items have xs={12}, while "page body" has xs={10}.

I would expect that the following container would do the job:

...

ANSWER

Answered 2021-Jun-04 at 08:10

I had an issue like this a few months ago. Just add a above and below the Page Body grid item. Still you may find other solutions but this one should work fine.

Source https://stackoverflow.com/questions/67833598

QUESTION

Is there a reason on why its not skipping to the else (Selenium)?

Asked 2021-Jun-13 at 22:50

def addtocart():
    #driver.get("https://www.mrporter.com/en-gb/mens/product/nike/shoes/low-top-sneakers/space-hippie-04-recycled-stretch-knit-sneakers/19971654707345242")
    driver.get("https://www.mrporter.com/en-gb/mens/product/nike/shoes/low-top-sneakers/plus-sacai-blazer-low-colour-block-leather-sneakers/10163292708776845?ntfyeu=jo5suw")
    
    while driver.find_element_by_xpath("/html/body/main/div/div[2]/div/div[1]/div[2]/div[8]/div[2]").is_displayed():
        time.sleep(2)
        driver.refresh()
        print("Item out of stock , waiting for product")
    else:    
        driver.find_element_by_xpath("/html/body/main/div/div[2]/div/div[1]/div[2]/div[6]/div/div/div").click()
         

addtocart()

...

ANSWER

Answered 2021-Jun-13 at 21:52

Even though the element is not display on the screen, it is still inside of the website HTML. so to get around this simply get the .text attribute of the element, then check if the text contains Sorry, this item is sold out.

Source https://stackoverflow.com/questions/67962827

QUESTION

stack children is overflowing on image

Asked 2021-Jun-13 at 22:40

I clip to hardedge in stack even after this black container is overflowing how can i fix this if i do fit: BoxFit.fill the image get stretched. i tried wrapping the stack in a container or card and then clip to haredge that didnt work too

here is the code i tried

...

ANSWER

Answered 2021-Jun-13 at 22:40

Can't reproduce with the given snippet, it works just fine on me when I run it, maybe try to put the complete snippet?

But anyways, you can achieve the same behavior without the Stack widget, just put the Texts as a child of the Container whose hold the image.

Here is the working example, you can copy paste and run in DartPad

Source https://stackoverflow.com/questions/67962223

QUESTION

HTML challenge - Time slots

Asked 2021-Jun-13 at 05:07

I need to build something like in the following:

This is the structure I built so far:

https://codepen.io/orassayag/pen/XWMxWPp

But I have difficult times to build the grid.

This is the code:

...

ANSWER

Answered 2021-Jun-13 at 05:07

I managed to solve the challenge.
I rebuilt the project completely, made it with divs and flexbox, and filled the slots by using simple JavaScript (instead of using margin-left in the SCSS).
Also, I built the project in React.

If anyone is interested, here are the final results:
https://github.com/orassayag/job-interview-exercises/tree/master/jobs/job-13/project

Source https://stackoverflow.com/questions/67932742

QUESTION

Why does VS Code consider an import valid but WebPack does not?

Asked 2021-Jun-13 at 02:00

I am pretty sure it is all about the version of WebPack I use ("webpack-cli": "3.3.11") but I want to be sure I am right before going on another journey of debugging for upgrading WebPack (I tried to upgrade it to 5 but it does not work without a config file, I am just stretching the limit against the read-the-manual instruction).

In the tsconfig.base.js I have this:

...

ANSWER

Answered 2021-Jun-13 at 02:00

I was having a WebPack config file that was not actually used. I was actually using CRA. So I started using react-app-rewired and WebPack v4 as an intermediate solution till I start using "pure" WebPack. In config-overrides.js I put:

Source https://stackoverflow.com/questions/67949873

QUESTION

How do I center an image with a width less than 100%?

Asked 2021-Jun-12 at 21:39

When I have display as 100%, everything displays fine, but I'd like to have the image a little smaller so I've set the width as 30% for now - the issue with this is that the image stops centering once I do that (would anybody know why that's the case?).

If I remove display block, it centers, but then sits on the same line as the button - however if I then add in display:block to the button, the left/right padding stretches across the width of the container.

Here's the codepen where I've saved my project: https://codepen.io/vivl/pen/GRWYeaw - but here's the code I'm having trouble with:

...

ANSWER

Answered 2021-Jun-12 at 16:30

You can set auto margins to buttons and icons and make buttons display: block; and width: fit-content:

Source https://stackoverflow.com/questions/67950769

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install STRetch

You can download it from GitHub.
You can use STRetch like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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