PACKMAN | PACKMAN : PACKing and Motion ANalysis | Genomics library
kandi X-RAY | PACKMAN Summary
kandi X-RAY | PACKMAN Summary
This package focuses on studying molecular structures and their dynamics using a simple yet informative property known as Protein Packing. Over the last few years, we have worked on several techniques to capture and quantify the protein packing, resulting in a few publications. This package has all the code to repeat and further develop these techniques.
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Top functions reviewed by kandi - BETA
- Run Packman
- Get the list of elements
- Get the stats
- Returns the pvalue of the model
- Set the bond angle of a bond
- Get the id of the request
- Set the location of the camera
- R Return the Torsion of bond between two atoms
- Load Packman
- Command line parser
- Calculate the coordinates of a sphere
- Returns the center of mass of mass
- Returns the center of mass of the molecule
- Returns the bond between this molecule
- Checks if any of the atoms in the molecule are in the given distance
- Calculates the Entropy
- Calculate the entropy of the host
- Calculate the entropy of an entity
- Returns the domain s domain ID
- Calculate fluctuations
- Calculates the RMSD between two groups
- Run Entropy
- Argument parser
- Calculates the movie of the molecule
- Runs the hinge scanner
- Runs the HDANM molecule
- Calculates the packing Entropy
PACKMAN Key Features
PACKMAN Examples and Code Snippets
Lines of Code : 4License : Non-SPDX (NOASSERTION)
Copypip install py-packman
git clone https://github.com/Pranavkhade/PACKMAN
cd PACKMAN
python setup.py install
python -m packman gui
python3 -m packman gui
Community Discussions
Trending Discussions on PACKMAN
QUESTION
this is the code I wrote, and I have been getting the error.
What I am trying to do is that Client have 2 child classes "CASUAL_JOB and CONTRACT_JOB" but these 2 classes have Client No (primary key of Client Table) under different Heading. So my target is to find total cost (info in Invoice Table) which is integrated with JobID (present in Invoice, Contract_Job, Contract_job Tables) and retrieve Client Info from Client Table
(+) is for left Outer Joint
...ANSWER
Answered 2020-Oct-11 at 11:00I formatted your code so it's readable. And by indenting it, you can see where the problem is. It's in line 6/7 in the "FROM" part. Oracle can't really figure out what you're trying to do with that statement and when the parser reaches the end of the query at "(+)", he tells you that there is something missing/awkward. That's why he tells you it's the "(+)". But the problem is earlier. It's the way your build your "FROM" part. It's a bit confusing, so here is just a pointers:
when using "union", you don't give an alias to each of the two queries. The result set of both queries is "unioned", so you can't reference either of them in the "WHERE" part.
You should rewrite your query and instead of joining Client with a Union, you should Union two separate queries: one joining Client with casual_jobs, one joining Client with contrac_job. Following example is done without testing it in an SQL tool:
QUESTION
I need to create an outline of a 2d polygon (I do that by scaling the vertices along the average of the edge normal's). But there is a problem when handling concave polygons because of the possible self intersections.
I've tried to fix those self intersections via the benley-ottmann algorithm and discarding the smallest part, but that doesn't preserve the original shape very well.
So I would like to know if there is a way that preserves the original shape better?
...ANSWER
Answered 2020-Jun-16 at 07:49I would look into "polygon offsetting", the basic idea would be that for every vertex of the polygon you change that into a circle with a given radius, for every segment of the polygon you change that into a rectangle parallel to the original segment, and take the union of all resulting forms.
QUESTION
I am trying to make a pac game. I am using C++ and sfml. Everything looks fine for now, but the problem is that I don't have an idea how to make the map collision detection. I am loading the map from .bmp file. Here is a picture:
Is there a way to set wall cordinates so I could detect them on a collision ?
Here is a part of my code:
...ANSWER
Answered 2019-Jul-25 at 13:58The simplest thing you can do is to divide your world into cells.
Every elements of your game can be placed into a tile (2D array of boolean for example, true is there is an element and false is there is no element).
Your character will be able to change its direction with your controls, and its position x and y will be modified over time depending on its direction.
You'll have to make an algorithm that checks if a tile is reachable from another tile given a direction. Thus, you'll be able to move your character in a direction and stops him when he can't reach a tile (Which is basically a collision detection + solving a collision).
If you want to learn about 2D collisions, here is a great article that treats 2D tilemap collision: https://jonathanwhiting.com/tutorial/collision/.
Example of tilemap stored into a 2D array:
QUESTION
I have a problem with installing packages via the built in Package Manager of enthought Canopy. I tried to use the "Upgrade all packages", but it failed.
Beforehand, I tried to solve my problem according to this post, but it did not functionating.
The Package Manager returns with the message:
...ANSWER
Answered 2019-Jun-27 at 11:30Please uninstall pyside, shiboken, and qt, then try again. (Pyside is already installed using qt 4, and this cannot coexist with qt 5 in the same environment.) Alternatively, you could use Canopy's integrated EDM to create a new environment with pyqt 5, so you could still use pyside / qt 4 in your original user environment and use pyqt 5 in your new environment.
QUESTION
I'm creating a web service that generates random personal data (hence the inclusion of a counter in the code below) using a combination of a third party web service and methods. However, when I specified the content type as
application/json
, the result contains escape backslashes.
From what I've read, this is probably a result of the serialization used but despite trying several solutions, I can't solve the issue.
Data Model
...ANSWER
Answered 2019-Jan-31 at 14:41Here's the solution to the problem, as kindly posted by dbc.
That's an odd things to do and I'm surprised it works at all, but the result seems to be a duplicate of JSON.NET Parser seems to be double serializing my objects. And the solution should be the same -- declare that your method returns an ActionResult> for some appropriate T (here ` Dataset.Item apparently?) and let the framework do the serialization. Don't do it yourself.
QUESTION
I am trying to compile cvs-fast-import (https://gitlab.com/esr/cvs-fast-export) on windows running msys2 but when I run make I get an error:
main.c:9:10: fatal error: regex.h: No such file or directory
This referrs to main.c which looks like this:
...ANSWER
Answered 2018-Mar-14 at 20:28On my system, /mingw32/include/regex.h is provided by mingw-w64-i686-libsystre. Try running this:
QUESTION
I run Canopy version Version: 2.1.3.3542 (64 bit) on Windows 10. Canopy cant manage to update any package, all results in the same
log output for a numpy update (for example):
...ANSWER
Answered 2017-Sep-30 at 23:47It looks like a previous update was force-aborted, possibly leaving the environment corrupted. Assuming that you are using the standard installer, then it should suffice to
- reboot your computer
- temporarily disable your anti-virus software if possible (or at least disable its more intrusive / slow functionality, such as online checking each of the tens of thousands of package files that Canopy provides),
- from the Canopy Tools menu, select Troubleshoot => Reset Python environment
QUESTION
i have been trying to display the list of installed apps on click of a button but the package manager is throwing a null pointer exception
this is my java class which is invoked on click
...ANSWER
Answered 2017-Jul-03 at 06:13Initialise the package manager inside activity life cycle as the context is available there.As the getPackageManager is always called on the context, the earlier code would have resulted in null context
You can call this statement in onCreate() method
QUESTION
I don't know why this is not working. The function call at the bottom of displayWorld(); if you commit that line out and then console.log in the console it works. But if I call the function in the code it breaks.
sorry here error
Uncaught TypeError: Cannot set property 'innerHTML' of null at displayWorld (index.html:40) at index.html:43
The HTML
...ANSWER
Answered 2017-Mar-05 at 04:00I think its because you are loading the js file before the div tag its created, put the script at the end of the body and that should fix it
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