weblogo | WebLogo 3 : Sequence Logos redrawn | Genomics library

by WebLogo Python Version: 3.7.12 License: Non-SPDX

X-Ray Key Features Code Snippets(1)Community Discussions(10)Vulnerabilities Install Support

kandi X-RAY | weblogo Summary

weblogo is a Python library typically used in Artificial Intelligence, Genomics applications. weblogo has no bugs, it has no vulnerabilities, it has build file available and it has low support. However weblogo has a Non-SPDX License. You can install using 'pip install weblogo' or download it from GitHub, PyPI.

WebLogo is a web based application designed to make the generation of sequence logos as easy and painless as possible. WebLogo can create output in several common graphics' formats, including the bitmap formats GIF and PNG, suitable for on-screen display, and the vector formats EPS and PDF, more suitable for printing, publication, and further editing. Additional graphics options include bitmap resolution, titles, optional axis, and axis labels, antialiasing, error bars, and alternative symbol formats. A sequence logo is a graphical representation of an amino acid or nucleic acid multiple sequence alignment. Each logo consists of stacks of symbols, one stack for each position in the sequence. The overall height of the stack indicates the sequence conservation at that position, while the height of symbols within the stack indicates the relative frequency of each amino or nucleic acid at that position. The width of the stack is proportional to the fraction of valid symbols in that position. Crooks GE, Hon G, Chandonia JM, Brenner SE WebLogo: A sequence logo generator, Genome Research, 14:1188-1190, (2004) Full Text. Schneider TD, Stephens RM. 1990. Sequence Logos: A New Way to Display Consensus Sequences. Nucleic Acids Res. 18:6097-6100.

Support

Quality

Security

License

Reuse

Support

weblogo has a low active ecosystem.

It has 127 star(s) with 37 fork(s). There are 8 watchers for this library.

It had no major release in the last 12 months.

There are 5 open issues and 97 have been closed. On average issues are closed in 394 days. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of weblogo is 3.7.12

Quality

weblogo has 0 bugs and 0 code smells.

Security

weblogo has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

weblogo code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

weblogo has a Non-SPDX License.

Non-SPDX licenses can be open source with a non SPDX compliant license, or non open source licenses, and you need to review them closely before use.

Reuse

weblogo releases are available to install and integrate.

Deployable package is available in PyPI.

Build file is available. You can build the component from source.

Installation instructions, examples and code snippets are available.

weblogo saves you 13981 person hours of effort in developing the same functionality from scratch.

It has 28019 lines of code, 695 functions and 72 files.

It has high code complexity. Code complexity directly impacts maintainability of the code.

Top functions reviewed by kandi - BETA

kandi has reviewed weblogo and discovered the below as its top functions. This is intended to give you an instant insight into weblogo implemented functionality, and help decide if they suit your requirements.

Build the DeOptionParser object
Return a dictionary of position weight matrix format
Return sequence names
Return a new Seq with the removed characters removed
Construct motif from a text file
Split the tree into n nodes
Return True if s is an integer
Check if a string is a character
Build logo data
Construct a motif from a FASTA file
Create a file - like object from a URL
Return a Color instance from a string
Parses the input file
Start the HTTP server
Randomize a tree
Merge bootstrap trees
Prune the given taxon
Create a file from URL
Print a table of node information
Returns a list of constant values in the taxonomy
Combine two matrices
Parse the matrix
Format options
Mask sequences with low complexity
Build logo format
Returns a formatted form
Check whether two trees are compatible
Writes partition data to file

Get all kandi verified functions for this library.

weblogo Key Features

No Key Features are available at this moment for weblogo.

weblogo Examples and Code Snippets

Cannot Get image From Database Django Framework

Python

Lines of Code : 3

License : Strong Copyleft (CC BY-SA 4.0)

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Community Discussions

Trending Discussions on weblogo

httpclient.post / Sending data to API not working with formData.append but does with body.set

React Router changes URL but doesn't update the page unless it was refresh from browser

Cron job - Moving data between databases

Avatar Not Showing Laravel

Cannot Get image From Database Django Framework

Background image overlaps header & footer, text won't center in the middle

Need to shrink logo image inside a division while scrolling down on a page

JS function always keep executing code at the start of my html

Weblogo - selenocysteine alphabet

ng-view not fetching my template Angular 1.6.2

QUESTION

httpclient.post / Sending data to API not working with formData.append but does with body.set

Asked 2021-Mar-17 at 00:35

Im migrating the UX for a legacy application that has the APis developed in ASP.NET

When POSTing as follows, it all works perfect. They get the data:

...

ANSWER

Answered 2021-Mar-17 at 00:35

The problem is with your header.

Change this line:

Source https://stackoverflow.com/questions/66665282

QUESTION

React Router changes URL but doesn't update the page unless it was refresh from browser

Asked 2020-Jun-22 at 11:30

So I watched a lot of tutorials on YouTube about React for beginners, However, I was at this URL (localhost/) and clicked on the Settings button changes URL to (localhost/settings) and doesn't do automatically in the browser, If I refreshed the browser with the URL (localhost/settings), the page updated and rendered from Settings.js

Here is my code and JS if you mind helping me: header.js

...

ANSWER

Answered 2020-Jun-22 at 07:57

Your Header component should be inside Router component. Working Codesandbox link

Source https://stackoverflow.com/questions/62509613

QUESTION

Cron job - Moving data between databases

Asked 2020-Apr-03 at 16:11

I have a membership website in Wordpress which is built with a custom post type called 'members'.

For many reasons, we have used a cron job to run and populate these CPT fields with data from a separate database, (it wasn't feasible for the company to use the standard WP database to store their data.

The database starts in MS Access, is exported to a separate table inside our WP database and then the cron job pulls the data from this database and adds it to the CPT database.

Inside the cron job document we have lines like this:

...

ANSWER

Answered 2020-Apr-03 at 16:11

Replace this line update_field( 'gold_or_silver_member', 'Silver', $post_id );

With this code:

Source https://stackoverflow.com/questions/60998042

QUESTION

Avatar Not Showing Laravel

Asked 2020-Mar-13 at 10:57

I'm working with laravel framework, I have to create a profile so I changed the table User created in the Auth.. all works perfectly. I also added a Picture for the Profile picture or Avatar in the User table.

I made a profile page Image are showing and even to my nav bar.

this is the code I used.. and it work in other pages.

...

ANSWER

Answered 2020-Mar-13 at 10:01

Set asset as below

Source https://stackoverflow.com/questions/60668297

QUESTION

Cannot Get image From Database Django Framework

Asked 2020-Mar-04 at 09:29

I want to create a setting in admin panel which will help me to change the website logo from the admin panel. I create a model for database and it's working and uploading an image to the database + folder. but I cannot get this image to the Website template. when I'm viewing page source image SCR is empty.

my Model.py

...

ANSWER

Answered 2020-Mar-04 at 08:54

You should write the required information in the settings.py file.

https://docs.djangoproject.com/en/dev/ref/settings/#media-root

Source https://stackoverflow.com/questions/60522094

QUESTION

Background image overlaps header & footer, text won't center in the middle

Asked 2019-Oct-29 at 19:03

So I want to have an image that covers the entire screen until you start scrolling down. (This image is also a slideshow with fading animation) At the center of that image should be text. A header should overlap the image and a footer should be beneath it. (I will add more content inbetween the footer and the image later)

However, currently it is not working as intended. Both the header and the footer are overlapped by the background image. The text centers right where the header and footer snap together instead of in the middle of the background image. I need some help with this. Refer to an image and code below. You may also view the page at https://www.mh-rp.com.

image with notes and clarification

...

ANSWER

Answered 2019-Oct-29 at 19:03

Add those two selectors.

Source https://stackoverflow.com/questions/58613558

QUESTION

Need to shrink logo image inside a division while scrolling down on a page

Asked 2018-Nov-16 at 08:47

I am creating a logo division for a website, however I can't seem to get this to work. I want the logo to shrink as you scroll down on the site and to regain its initial position when scroll up to top. I've tried a few javascript/jQuery functions but its not working. This is the current function i've played with and it doesn't seem to like it. How do I fix it?

HTML:

...

ANSWER

Answered 2018-Nov-16 at 08:32

You seem to miss a semicolon in your CSS:

Source https://stackoverflow.com/questions/53333889

QUESTION

JS function always keep executing code at the start of my html

Asked 2018-Apr-02 at 13:21

I'm new to JS, I watched some crash course on YouTube and try to do it on the same time. I'm using Visual Studio Code with an extension live server in order to see changes quickly.

In my JS code:

...

ANSWER

Answered 2018-Apr-02 at 13:12

You are calling function in this line

Source https://stackoverflow.com/questions/49611943

QUESTION

Weblogo - selenocysteine alphabet

Asked 2017-Nov-02 at 16:53

I want to generate logo with selenocysteine, but when i choose option with reduced_protein_alphabet i get error 'Repetative alphabet'

...

ANSWER

Answered 2017-Nov-02 at 16:53

My solution: Here what i've done

Check if the infile do not have errors.
add a alphabet 'ACDEFGHIKLMNPQRSTVUWY' to option -a
color aminoacids in this alphabet -C

weblogo -f sc.txt -D fasta -o logo -F pdf -n 100 -A protein -a 'ACDEFGHIKLMNPQRSTVUWY' -s large -C yellow U selenocysteine -C red DE acidic -C black AVLIPWFM Hydrophobic -C blue KRH basic -C purple QN Neutral -C green GSTYC Polar

I didn't realese it is that simple. Maybe it will help someone!

Source https://stackoverflow.com/questions/46809339

QUESTION

ng-view not fetching my template Angular 1.6.2

Asked 2017-Sep-23 at 03:55

  TFC.config(function($routeProvider){
  $routeProvider
  .when('/bookings', {
    templateUrl: '/mybookings.html',
    controller: 'accountCtrl'
  })
  .when('/credits', {
    templateUrl: '/mycredits.html',
    controller: 'myCreditsCtrl'
  })
  .when('/membership', {
    templateUrl: 'membership.html',
    controller: 'membershipCtrl'
  })
  .when('/profile', {
    templateUrl: 'profile.html',
    controller: 'profileCtrl'
  })
  .when('/invoices', {
    templateUrl: 'invoice.html',
    controller: 'invoiceCtrl'
  })
  .when('/team', {
    templateUrl: 'team.html',
    controller: 'teamCtrl'
  })
  .when('/benefits', {
    templateUrl: 'benefits.html',
    controller: 'benefitsCtrl'
  })
  .when('/refer', {
    templateUrl: 'refer.html',
    controller: 'referCtrl'
  })
  .when('/support', {
    templateUrl: 'support.html',
    controller: 'supportCtrl'
  })
  .when('/about', {
    templateUrl: 'accountabout.html',
    controller: 'accountAboutCtrl'
  })
})

...

ANSWER

Answered 2017-Mar-10 at 06:29

For the mybookings.html file to load default, you have to specify the default url parameter in the route provider. This is the method for that. I hope this will fix your issue.

Source https://stackoverflow.com/questions/42711597

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install weblogo

To install with pip:.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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