Cassiopeia | A Package for Cas9-Enabled Single Cell Lineage Tracing Tree | Genomics library

by YosefLab Python Version: 2.0.0 License: MIT

X-Ray Key Features Code Snippets Community Discussions(3)Vulnerabilities Install Support

kandi X-RAY | Cassiopeia Summary

Cassiopeia is a Python library typically used in Artificial Intelligence, Genomics applications. Cassiopeia has no vulnerabilities, it has build file available, it has a Permissive License and it has low support. However Cassiopeia has 2 bugs. You can install using 'pip install Cassiopeia' or download it from GitHub, PyPI.

. [Coverage] Cassiopeia: A pipeline for single-cell lineage tracing data.

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Quality

Security

License

Reuse

Support

Cassiopeia has a low active ecosystem.

It has 58 star(s) with 17 fork(s). There are 10 watchers for this library.

It had no major release in the last 12 months.

There are 11 open issues and 36 have been closed. On average issues are closed in 36 days. There are 8 open pull requests and 0 closed requests.

It has a neutral sentiment in the developer community.

The latest version of Cassiopeia is 2.0.0

Quality

Cassiopeia has 2 bugs (0 blocker, 1 critical, 0 major, 1 minor) and 280 code smells.

Security

Cassiopeia has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

Cassiopeia code analysis shows 0 unresolved vulnerabilities.

There are 1 security hotspots that need review.

License

Cassiopeia is licensed under the MIT License. This license is Permissive.

Permissive licenses have the least restrictions, and you can use them in most projects.

Reuse

Cassiopeia releases are available to install and integrate.

Deployable package is available in PyPI.

Build file is available. You can build the component from source.

Installation instructions are not available. Examples and code snippets are available.

It has 17593 lines of code, 630 functions and 99 files.

It has high code complexity. Code complexity directly impacts maintainability of the code.

Top functions reviewed by kandi - BETA

kandi has reviewed Cassiopeia and discovered the below as its top functions. This is intended to give you an instant insight into Cassiopeia implemented functionality, and help decide if they suit your requirements.

Plot a phylogenetic tree
Place a forest tree and annotations
Tests if a node is a leaf node
Computes the size of the colorstrip
Estimate missing data rates for missing data
Returns the length of the branch between two nodes
Return the list of children of a node
Returns the mean depth of the tree
Performs a split on the given character matrix
Converts lineage_profile to character matrix
Solve the similarity matrix
Compute the number of triplets corrected for a given tree
Calculates the spectral improvement of a cut
Constructs a subtree based on the split criteria
Plot overlap heatmap
Sample a triplet from the given depth
Performs a split on a given character matrix
Perform Fitch count on a given meta data
Calculates the likelihood of a decision tree
Calculate the likelihood of a given tree
Place a tree in place
Plot a matplotlib plot
Uploads and saves the given tree to iTol
Solve the decision tree
Constructs a list of collapsed clusters
Convert alleles to character matrix

Get all kandi verified functions for this library.

Cassiopeia Key Features

No Key Features are available at this moment for Cassiopeia.

Cassiopeia Examples and Code Snippets

No Code Snippets are available at this moment for Cassiopeia.

Community Discussions

Trending Discussions on Cassiopeia

Why does first line of

 text display with some indent when formatting is changed with CSS?

AttributeError: 'function' object has no attribute 'grid'

How to iterate through object containing other object types in C#

QUESTION

Why does first line of

 text display with some indent when formatting is changed with CSS?

Asked 2021-Nov-26 at 20:46

I'm trying to change the appearance of code sections on my Joomla 4 website using the Cassiopeia template. A sample HTML source looks like this:

...

ANSWER

Answered 2021-Nov-26 at 20:46

Please update your code a bit, remove margins from styles for the code element and make it a block element:

Source https://stackoverflow.com/questions/70129609

QUESTION

AttributeError: 'function' object has no attribute 'grid'

Asked 2020-Aug-27 at 23:57

Im a streamer and new to python if anyone can helpo me sort this out ill be super greatful!

...

ANSWER

Answered 2020-Aug-26 at 17:23

You used the wrong variable:

Source https://stackoverflow.com/questions/63602635

QUESTION

How to iterate through object containing other object types in C#

Asked 2020-Jan-13 at 22:53

(Complete noob here, appologies if I'm unclear!) I have been using Riot Games' API to get information of a players stats on specific characters in a game. I used Json2CSharp in order to create the following data object.

...

ANSWER

Answered 2020-Jan-13 at 22:53

As described in the comments you need to define a single class that represents all of the Champions. In the example below I have simply renamed the Ziggs class in your question to Champion:

Source https://stackoverflow.com/questions/59724501

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install Cassiopeia

You can install using 'pip install Cassiopeia' or download it from GitHub, PyPI.
You can use Cassiopeia like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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