openbio | A collection of open source bioinformatics tools | Genomics library

by addgene Python Version: v0.4 License: MIT

X-Ray Key Features Code Snippets Community Discussions(2)Vulnerabilities Install Support

kandi X-RAY | openbio Summary

openbio is a Python library typically used in Artificial Intelligence, Genomics applications. openbio has no bugs, it has no vulnerabilities, it has build file available, it has a Permissive License and it has low support. You can download it from GitHub.

A collection of open source bioinformatics tools developed and used by Addgene.

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Quality

Security

License

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Support

openbio has a low active ecosystem.

It has 7 star(s) with 1 fork(s). There are 19 watchers for this library.

It had no major release in the last 12 months.

openbio has no issues reported. There are 2 open pull requests and 0 closed requests.

It has a neutral sentiment in the developer community.

The latest version of openbio is v0.4

Quality

openbio has 0 bugs and 0 code smells.

Security

openbio has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

openbio code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

openbio is licensed under the MIT License. This license is Permissive.

Permissive licenses have the least restrictions, and you can use them in most projects.

Reuse

openbio releases are available to install and integrate.

Build file is available. You can build the component from source.

Top functions reviewed by kandi - BETA

kandi has reviewed openbio and discovered the below as its top functions. This is intended to give you an instant insight into openbio implemented functionality, and help decide if they suit your requirements.

Perform recombination
Aggregates the signature counts for each signature
Convert a set of patterns into a list of rows
Process the data and write to a file
Extract patterns from the input file
Extract a pattern from a read
Create the required directories
Get all FASTQ files ending in a folder
Read a fastq file
Generate output file name
Determine if there are no signatures
Return the note for a given pattern
Return True if signature_name matches the given file name
Count the number of reads in a set of reads
Run serotypes
Log to stdout

Get all kandi verified functions for this library.

openbio Key Features

No Key Features are available at this moment for openbio.

openbio Examples and Code Snippets

No Code Snippets are available at this moment for openbio.

Community Discussions

Trending Discussions on openbio

Emulating Solaris 10 SPARC on QEMU

How to launch openbios from Qemu

QUESTION

Emulating Solaris 10 SPARC on QEMU

Asked 2019-Sep-02 at 12:18

I have an old Solaris SPARC application that I'm trying to get running.

I learned from this question that x86 Solaris won't cut it. I recently learned that VM virtualbox can't emulate SPARC architecture. Therefore, I am currently trying to emulate Solaris 10 SPARC using QEMU.

I have acquired a Solaris 10 SPARC iso (sol-10-u11-ga-sparc-dvd.iso) from here.

I have Qemu 3.1.50 installed.

However, when I try to run, it gives me:

...

ANSWER

Answered 2019-Apr-05 at 09:41

You're trying to run with only 512 mb of RAM:

Source https://stackoverflow.com/questions/55525170

QUESTION

How to launch openbios from Qemu

Asked 2018-Jul-20 at 07:09

Good day,

So I am following this coreboot v3 + OpenBIOS tutorial Here .

In the instructions I have the following...

...

ANSWER

Answered 2018-Jul-20 at 07:09

The examples are not up to date, as you have noticed by the renaming of qemu to qemu-system-x86_64.

I managed to get the examples to work using only the cirrus video card, and by renaming the outputs of the zips (bin - bios files to bios-256k.bin). I did this because by adding the -L option I specify the bios location and qemu will look for a file called bios-256k.bin as the bios. The command to run the bios with cirrus (all done while in the foo directory) was

Source https://stackoverflow.com/questions/49405417

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install openbio

You can download it from GitHub.
You can use openbio like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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