rgi | Resistance Gene Identifier | Genomics library

by arpcard Python Version: 6.0.2 License: Non-SPDX

X-Ray Key Features Code Snippets Community Discussions(6)Vulnerabilities Install Support

kandi X-RAY | rgi Summary

rgi is a Python library typically used in Artificial Intelligence, Genomics applications. rgi has no bugs, it has no vulnerabilities, it has build file available and it has low support. However rgi has a Non-SPDX License. You can download it from GitHub.

Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on homology and SNP models.

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Quality

Security

License

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Support

rgi has a low active ecosystem.

It has 246 star(s) with 63 fork(s). There are 17 watchers for this library.

It had no major release in the last 12 months.

There are 30 open issues and 157 have been closed. On average issues are closed in 262 days. There are 1 open pull requests and 0 closed requests.

It has a neutral sentiment in the developer community.

The latest version of rgi is 6.0.2

Quality

rgi has 0 bugs and 0 code smells.

Security

rgi has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

rgi code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

rgi has a Non-SPDX License.

Non-SPDX licenses can be open source with a non SPDX compliant license, or non open source licenses, and you need to review them closely before use.

Reuse

rgi releases are available to install and integrate.

Build file is available. You can build the component from source.

rgi saves you 3664 person hours of effort in developing the same functionality from scratch.

It has 7827 lines of code, 366 functions and 44 files.

It has high code complexity. Code complexity directly impacts maintainability of the code.

Top functions reviewed by kandi - BETA

kandi has reviewed rgi and discovered the below as its top functions. This is intended to give you an instant insight into rgi implemented functionality, and help decide if they suit your requirements.

Run blast results
Extract the nth bar bar of a string
Parses a FASTA file and returns a dict of predicted genes
Extract the nth hash of a bunch
Runs blast results
Find the number of dash in a subject
Create a JSON file from a dictionary
Get taxon kers for single species
Extract the kmers from two files
Counts the number of kers with kers
Split variant sequences
Writes a fasta annotation file
Query the kers index
Removes all files
Run the script
Count the number of kers with kers
Split nucleotide sequences into metadata
Create a fasta annotation file for each model
Remove all files and directories
Load a reference card reference and wildcards
Checks if the given class is a drug
Load file from local db
Get prevalence_sequences txt file
Get the data version of the card json file
Process rRNA query
Load reference card reference
Finds all the drug classifications for a given class
Main worker function
Run Prodigal
Prepare output files
Clean up temporary files
Load a file
Returns a dict of prevalence_sequences
Determine the working directory
Get the data version from a json file

Get all kandi verified functions for this library.

rgi Key Features

No Key Features are available at this moment for rgi.

rgi Examples and Code Snippets

No Code Snippets are available at this moment for rgi.

Community Discussions

Trending Discussions on rgi

converting base64 or image link to an image without saving the image

Web Scraping using Requests - Python

I can't import stock data consistently in R

Ansible command loop with synched array

Convert list list to dictionary from linq to sql query results c#

Bootstrap panels - same outer height and same panel-body height

QUESTION

converting base64 or image link to an image without saving the image

Asked 2020-Dec-03 at 10:41

I am working on some price tracker that checks the price if changed to send an email to the user but I was wondering if I can convert an image link or the bsase64 of the image to a an image.png without saving the image on my file system. Here is my code of getting the image link and converting it to a base64(I know how to save an image on my file system and send it per mail).

This is an example:

...

ANSWER

Answered 2020-Dec-03 at 10:41

An email message is just text. To embed an image into an email message, you have to use a content type which allows this, like HTML, and within that link to the attached image. As a crude fallback, send a text part and an image part and hope that the recipient's email client will render them both. (You can add "Content-disposition: inline" to the attachment to suggest that it should.) Either way, you need a multipart MIME container, with the actual message in one part, and the image in another.

Depending on which you choose, you want to end up with either

Source https://stackoverflow.com/questions/65106943

QUESTION

Web Scraping using Requests - Python

Asked 2020-Jul-31 at 18:14

I am trying to get data using the Resquest library, but I’m doing something wrong. My explanation, manual search:

URL - https://www9.sabesp.com.br/agenciavirtual/pages/template/siteexterno.iface?idFuncao=18

I fill in the “Informe o RGI” field and after clicking on the Prosseguir button (like Next):

enter image description here

I get this result:

enter image description here

Before I coding, I did the manual search and checked the Form Data:

enter image description here

And then I tried it with this code:

...

ANSWER

Answered 2020-Jul-31 at 18:14

When you go to the site using the browser, a session is created and stored in a cookie on your machine. When you make the POST request, the cookies are sent with the request. You receive an session-expired error because you're not sending any session data with your request.

Try this code. It requests the entry page first and stores the cookies. The cookies are then sent with the POST request.

Source https://stackoverflow.com/questions/63196544

QUESTION

I can't import stock data consistently in R

Asked 2020-Jun-06 at 08:05

Here are the codes that I use:

...

ANSWER

Answered 2020-Jun-05 at 05:28

Try adding some sleep time (say 3 seconds) every n number of tickers.

Source https://stackoverflow.com/questions/62208363

QUESTION

Ansible command loop with synched array

Asked 2020-Feb-12 at 15:12

I need to iterate through 2 synched array to run bash commands

list1: a b c

list2: 1 2 3

I want to obtain

a1 b2 c3

and not

a1 a2 a3 b1 b2 b2 c1 c2 c3

I'm tryng with "with_togheter" but without success

this is my task

...

ANSWER

Answered 2020-Feb-12 at 15:12

This is a simple demonstration of the zip filter that will fix your issue. I used 3 input list just to show it can work with more that two (and also because your "abc, 123" example planted a song in my brain for the rest of the day....)

Note: following your comment, you can acheive the exact same result as below in ansible 2.4 by replacing loop with with_list

The demo playbook

Source https://stackoverflow.com/questions/60189177

QUESTION

Convert list list to dictionary from linq to sql query results c#

Asked 2017-Aug-18 at 13:42

Im trying to convert the results of a ling to sql select results to a dictionary.

when do this:

...

ANSWER

Answered 2017-Aug-18 at 13:42

Remove GetEnumerator() from the query since you want the dictionary.

The error message tells you that you pass an enumerator but the desired type is an IEnumerable> which a Dictionary implements.

So this should work (note that i use x.i.ToString() because i is an int):

Source https://stackoverflow.com/questions/45757874

QUESTION

Bootstrap panels - same outer height and same panel-body height

Asked 2017-Mar-29 at 20:10

I need to have three Bootsrap panels (.panel) within a row (.row) all the same height, regardless of how much content is in each of them. I was able to set the outer height of each .panel using the jquery.matchHeight.js library (https://github.com/liabru/jquery-match-height). However, I've been unable to get the inner height the same (height of the .panel-body divs). I tried setting the height of .panel and .panel-body to 100% but this caused the background-color of the .panel-body divs to extend past the height of the containing .row.

Please take a look at the jsfiddle I created to see the problem in action: https://jsfiddle.net/vpdq2ugb/21/

...

ANSWER

Answered 2017-Mar-29 at 20:09

Try using the pink background div as a wrapper around all three panels, not separate backgrounds. Then do overflow:auto. This wrapper must have a defined height. Style the panel-body, panel and div with 100% height.

Here is a bootply: http://www.bootply.com/svJMjYtLso

Source https://stackoverflow.com/questions/43102969

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install rgi

You can download it from GitHub.
You can use rgi like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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