epic2 | Ultraperformant reimplementation of SICER | Genomics library

by biocore-ntnu Python Version: Current License: MIT

X-Ray Key Features Code Snippets Community Discussions(5)Vulnerabilities Install Support

kandi X-RAY | epic2 Summary

epic2 is a Python library typically used in Artificial Intelligence, Genomics applications. epic2 has no bugs, it has no vulnerabilities, it has build file available, it has a Permissive License and it has low support. You can download it from GitHub.

epic2 is an ultraperformant reimplementation of SICER. It focuses on speed, low memory overhead and ease of use. It also contains a reimplementation of the SICER-df scripts for differential enrichment and a script to create many kinds of bigwigs from your data. See CHANGELOG.txt in this directory. We are extremely responsive to bugs, issues and installation problems. We are proud to say that epic was 20% more downloaded on PyPI than MACS2 even, and we believe that was (among other things) because it was easy to install and use. We wish to make epic2 similarly easy to install and use, so please report any issues you have. The installation currently requires bioconda htslib to be installed for setup.py to find the appropriate headers. I will update the install script with more ways to include the headers.

Support

Quality

Security

License

Reuse

Support

epic2 has a low active ecosystem.

It has 35 star(s) with 7 fork(s). There are 2 watchers for this library.

It had no major release in the last 6 months.

There are 14 open issues and 36 have been closed. On average issues are closed in 49 days. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of epic2 is current.

Quality

epic2 has 0 bugs and 0 code smells.

Security

epic2 has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

epic2 code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

epic2 is licensed under the MIT License. This license is Permissive.

Permissive licenses have the least restrictions, and you can use them in most projects.

Reuse

epic2 releases are not available. You will need to build from source code and install.

Build file is available. You can build the component from source.

Installation instructions are not available. Examples and code snippets are available.

epic2 saves you 125 person hours of effort in developing the same functionality from scratch.

It has 325 lines of code, 9 functions and 7 files.

It has low code complexity. Code complexity directly impacts maintainability of the code.

Top functions reviewed by kandi - BETA

kandi has reviewed epic2 and discovered the below as its top functions. This is intended to give you an instant insight into epic2 implemented functionality, and help decide if they suit your requirements.

Convert a list of files into a dictionary
Calculate the normalized value of a gridded interval
Divide control to i_n
Calculates the normalized value of a gridded interval
Creates a path

Get all kandi verified functions for this library.

epic2 Key Features

No Key Features are available at this moment for epic2.

epic2 Examples and Code Snippets

No Code Snippets are available at this moment for epic2.

Community Discussions

Trending Discussions on epic2

How to share a variable between epics that are in different files?

Replace list in cell by values from other query

NodeJS + MongoDB - Want to add more nested values

Plotting a histogram gives height error msg

Odd Results on Multiple Slideshows

QUESTION

How to share a variable between epics that are in different files?

Asked 2021-Nov-03 at 09:12

I'm using redux-observable in my nextjs web application. There is a variable which has to be set in epic1 and accessed later in epic2:

...

ANSWER

Answered 2021-Nov-03 at 09:12

Sounds like good case for DI: docs

Source https://stackoverflow.com/questions/69819685

QUESTION

Replace list in cell by values from other query

Asked 2021-Sep-21 at 18:16

I have issue with defining smart data replacement in power query.

I am querying data from SharePoint, from multiple lists to create desired report.

If I need to replace values in column which is containing only 1 number, I am using merge queries function as "vlookup" replacement.

The issue starts when one column is containing multiple numbers, separated by semicolon.

"Vlookup_list" query: |Assignees_ID|Assignees_Names| |-|-| |1|Mark| |2|Irina| |3|Bart|

So is there a smart way to perform such transition? I was trying multiple possibilities but my knowledge is too low to perform it.

Kind regards Bartosz

...

ANSWER

Answered 2021-Sep-21 at 18:16

In powerquery

Load the Vlookup_list into powerquery. Name the query VlookupNamesQuery File .. close and load to ... create connection only

Load the Example Source list into powerquery

Right click the Assignees_ID column and split by each semi-colon into rows

Merge in VlookupNamesQuery and match on ID using left outer join. Expand using arrows atop column to get Assignees_Names

Group on UniqueID and Name. Use home ... advanced editor ... to modify code to use Text.Combine to put together the ones that were split, as per below

Source https://stackoverflow.com/questions/69273144

QUESTION

NodeJS + MongoDB - Want to add more nested values

Asked 2020-Oct-24 at 12:39

I have the following JSON structure:

...

ANSWER

Answered 2020-Oct-24 at 12:39

When using $set operator, you are updating the whole object (sub-document in mongodb linguo). To add a new field, use the dot notation:

Source https://stackoverflow.com/questions/64513287

QUESTION

Plotting a histogram gives height error msg

Asked 2020-Mar-11 at 02:38

I'm trying to plot a histogram based on percentages, I keep getting the below error:

...

ANSWER

Answered 2020-Mar-11 at 02:38

There is 7 items in X_per(yaxis) and 6 items in xaxis.

If you want 7 items instead. Adding 'epic7' into xaxis should do the job. xaxis.append('epic7')

I think you had missed few lines in your code:

Source https://stackoverflow.com/questions/60628177

QUESTION

Odd Results on Multiple Slideshows

Asked 2020-Jan-21 at 09:29

I've been working on a page on which a number of images are to change into other images and while it kind of works, most of the slideshows seem to stop at the second image and just keep repeating that one. They do the fadeouts/fadeins as intended and change at different rates per the intended effect. But each slideshow is supposed to rotate between 3 and 5 images and most of these never appear at all. I'm new to CSS and am probably missing something obvious, but I can't figure out what. It's especially puzzling that some behave differently than others, since they're all coded in the same way. Any help would be greatly appreciated. Here is the final product: https://www.dvdizzy.com/cp/ Here is the code:

...

ANSWER

Answered 2020-Jan-21 at 07:22

There should be all carousel function and slide index variables are unique.

Check below snippet.

Source https://stackoverflow.com/questions/59834665

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install epic2

You can download it from GitHub.
You can use epic2 like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

Find more information at: