metasv | integrative structural-variant caller | Genomics library

by bioinform Python Version: 0.5.4 License: BSD-2-Clause

X-Ray Key Features Code Snippets Community Discussions(1)Vulnerabilities Install Support

kandi X-RAY | metasv Summary

metasv is a Python library typically used in Artificial Intelligence, Genomics applications. metasv has no bugs, it has no vulnerabilities, it has build file available, it has a Permissive License and it has low support. You can download it from GitHub.

See for help and downloads.

Support

Quality

Security

License

Reuse

Support

metasv has a low active ecosystem.

It has 42 star(s) with 18 fork(s). There are 15 watchers for this library.

It had no major release in the last 12 months.

There are 24 open issues and 23 have been closed. On average issues are closed in 63 days. There are 2 open pull requests and 0 closed requests.

It has a neutral sentiment in the developer community.

The latest version of metasv is 0.5.4

Quality

metasv has 0 bugs and 0 code smells.

Security

metasv has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

metasv code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

metasv is licensed under the BSD-2-Clause License. This license is Permissive.

Permissive licenses have the least restrictions, and you can use them in most projects.

Reuse

metasv releases are available to install and integrate.

Build file is available. You can build the component from source.

metasv saves you 2783 person hours of effort in developing the same functionality from scratch.

It has 6023 lines of code, 251 functions and 36 files.

It has high code complexity. Code complexity directly impacts maintainability of the code.

Top functions reviewed by kandi - BETA

kandi has reviewed metasv and discovered the below as its top functions. This is intended to give you an instant insight into metasv implemented functionality, and help decide if they suit your requirements.

Run MetaSV
Return a list of Contig objects
Convert metasv file into a vcf file
Run age - based variant calling
Run SPAdes on a BED file
Wrapper function for parallelization
Perform genotype intervals
Generate SC_Interval intervals
Calculate the start and end of the alignment
Find the soft clip of a cigar
Finds the other BP
Use setuptools
Download a setuptools package
Download Setuptools
Parse command line arguments
Run spAdes on a BED file
Adds weighted score to score
Download a file from a given URL
Convert a SVTool file to a vcf file
Extract genotypes from BED files
Convert this variant to a VCF record
Performs parallel coverage intervals
Annotate vcfs using vcfs
Run a single age analysis
Run spades
Wrapper around parallelize_sc
Add neighbors to bam
Runs an age_parallel pipeline
Extract reads from a region
Convert a metasv file into a vcf file

Get all kandi verified functions for this library.

metasv Key Features

No Key Features are available at this moment for metasv.

metasv Examples and Code Snippets

No Code Snippets are available at this moment for metasv.

Community Discussions

Trending Discussions on metasv

extending php execution time

QUESTION

extending php execution time

Asked 2018-Mar-21 at 04:59

Have tried to extend the execution time by these methods but the script keeps ending prematurely. It is basically cycling through a mysql database and doing something with each row. It should be lasting maybe five to ten minutes but stops consistently early at the same spot. I have tried the following:

...

ANSWER

Answered 2018-Mar-21 at 04:59

From php.ini try to increase the max_execution_time and restart apache server.

To locate where your php.ini is you can create a phpinfo.php file and insert the following:

Source https://stackoverflow.com/questions/49373217

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install metasv

You can download it from GitHub.
You can use metasv like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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