ISOTOPE | ISOform-guided prediction of epiTOPEs in cancer | Continous Integration library
kandi X-RAY | ISOTOPE Summary
kandi X-RAY | ISOTOPE Summary
The ISOTOPE pipeline identifies cancer-specific splicing-derived epitopes from short-read RNA-seq data. The pipeline operates on individual tumor samples, without the requirement of additional controls or multiple tumor samples.
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Top functions reviewed by kandi - BETA
- Compute a peptide sequence
- Check the exonization of the DNA sequence
- Check if two exons overlap
- Return the value of a transcript
- Checks for mutations near the exonization
- Return the names associated to an exon
- Calculate the offset of a 33 line
- Check if there are coincidences in the mut_samples
- Generates random intronic positions
- Returns True if any of the regions in the list overlap
- Compute start and end coordinates from a list of values
- Extract junctions from a gtf file
- Given a list of exons_list returns the corresponding exons
- Get junction list
- Load gene ids from introns file
- Filter neoski files based on neoski
- Extract significant IR
- This function is used to filter IRES
- This function extracts the SEED SNESS events from the CHESS database
- Compares two random DNA sequences
- Associate gene IDs with gene ids
- Compute coverage bed file
- Extracts the neoski files from a gtf file
- Extracts the junction reads from Intropolis
- This function is used to filter IR genes
ISOTOPE Key Features
ISOTOPE Examples and Code Snippets
Community Discussions
Trending Discussions on ISOTOPE
QUESTION
I am using the splitting.js javascript library in my Rails 6 project. When I try to load the page I get "Uncaught TypeError: Splitting is not a function" in the console.
I have installed the javascript library using Yarn:
yarn add splitting
Splitting()
is called with other Javascript in scripts.js which is required in my applicaiton.js file. I have configured my application.js file in a number of ways to try to fix the issue but to no avail. Here is my current iteration of this file (entire file included in case there are other interactions to consider):
ANSWER
Answered 2021-Jun-04 at 10:25I solved this problem thanks to some help from @rossta. I needed to move all my import statement for the splitting.js module from application.js to the script.js file in which the module was being called. So I added the following to the top of scripts.js:
QUESTION
I applied isotope filter on my .Net core project dynamically. I successfully did it but a single minor error occur. After selecting the particular category position of the product not came first. Below see my two images
After Filter check the position of that image not changed(its need to come first)
My code Below Index.cshtml
...ANSWER
Answered 2021-May-18 at 09:40There are two ways:
1,Only change window onload part to:
QUESTION
please help, i have a bootstrap template with this footer , i trying to add a modal but when i click the modal button,the modal doesnt show up , is there any plugin that have not been added in my template ?
...ANSWER
Answered 2021-Apr-21 at 04:25Make sure your code contains bootstrap CSS and Bootstrap Js. Like,
QUESTION
I am hosting a website on Amazon s3. I have a simple user form that works when I am using a text editor like Atom, it sends notifications when I submit a form through API gateway to my email. The problem is when I deeply file to s3 bucket, there are no validation or submission notifications. Notifications are enables and I tried it in different browsers.
...ANSWER
Answered 2021-Apr-06 at 05:54After hours of research, all I had to do was to paste the script above my current script so that jQuery can be loaded from cache when a user visits the site.
QUESTION
I wish to have both Subscripts and Superscripts on my character vectors, relative to the X and Y values on a plot.
For example, the X values are the superscript and Y values are the subscript.
Here's an example of what it should look like:
I have tried pasting superscripts then plotting these, although it hasn't worked out like expected
Code for plot:
...ANSWER
Answered 2021-Mar-21 at 21:49We could use sprintf
or paste
to create the labels, then specify the label
in aes
and parse
it in geom_label
QUESTION
I am working on localizing a custom theme I created for WordPress. I have a problem when I try to localize a jQuery file. I understand a little JS and jQuery but not enough to understand where I did a mistake.
Here is the function :
...ANSWER
Answered 2021-Mar-15 at 15:52I found a solution:
QUESTION
I am working on a product page where the user has an option to filter on different boardgames. What I want to do is to give the user an option to filter on time, category of the game, number of players and age. When the user enters a checkbox on all 4 options there should be some games recommended based on the criteria. However when I check multiple boxes I get no result, what am I doing wrong? (I have more games in my file but post small amount)
Here's my code:
...ANSWER
Answered 2021-Mar-14 at 09:44So here is the problem :
QUESTION
I am using isotope.js to toggle different divs, the number was quite controlled 6 to 8, so I was using this function:
...ANSWER
Answered 2021-Mar-11 at 09:31If (?) I understood correctly you simply wish to toggle
the visibility of a number of div elements based upon the hyperlink that is clicked. Instead of using actual ID attributes, for certain tasks it is easier to use a class
attribute ~ here the various IDs vizContainer1
, vizContainer2
etc can be replaced with a single class attribute vizContainer
which then helps us identify an entire group of elements which we wish to process. In fact the code below doesn't need to use that to identify the elements as we are interested in the parent nodes.
By assigning the event listener
externally we can uncouple the HTML and the javascript and provide a more generic
event handler.
Note that in the HTML below I added data-id=first
etc to the DIV elements that are to be toggle ONLY so that the DIV elements can display something ( with CSS ) and are not actually required. The data-id=1
etc attributes ARE required for this method to work.
The below can easily accommodate any number of DIV elements to be toggled (within reason) so I hope this helps a little.
QUESTION
I need help with fixing my header I can not find the problem! At the beginning it looks fine but when you scroll down it cuts part of it off. But when you scroll back up it goes normal. I think it is with the hamburger menu because when you click on it, it increases the cut off. Here is the link to the website. https://perfectparadox8400.000webhostapp.com/ and here is a gif of what happens!
Link to the picture of what happens!
I only happens when you are on a phone. I used the inspector tools to test it and I did try it on a phone to.
Here is the header code.
...ANSWER
Answered 2021-Mar-04 at 16:16You adding the on scroll shrink
effect to the header
There is two ways to solve this
- removing
header-scrolled
css or change theheight
of header-scrolled to according to main height mentioned inheaderrr
css
QUESTION
This is the data that I need:
I already imported the table into R:
...ANSWER
Answered 2021-Mar-04 at 03:06You could grab the table without isotopes, then mimic the post request the page does if you decide to go with isotopes; then left-join the two on Name
column. You will get more rows back than were in left table (no isotopes) because there are multiple Change values
, but this matches with what you see in the method of viewing isotopes you describe, where there are comma separated lists of values against isotopes, within plots, rather than split out by rows.
I go for a more selective css selector to target the specific table of interest initially, rather than indexing into lists.
I use write_excel_csv
to preserve the character encoding of headers on write out (an idea I got from @stefan).
You can remove columns you don't want in output from joint_table
before writing out (subset/select etc).
r
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Install ISOTOPE
You can use ISOTOPE like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.
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