llama | Local Lineage and Monophyly Assessment | DevOps library

 by   cov-lineages Python Version: Current License: GPL-3.0

kandi X-RAY | llama Summary

kandi X-RAY | llama Summary

llama is a Python library typically used in Devops applications. llama has no bugs, it has no vulnerabilities, it has build file available, it has a Strong Copyleft License and it has low support. You can download it from GitHub.

Local Lineage and Monophyly Assessment.

            kandi-support Support

              llama has a low active ecosystem.
              It has 15 star(s) with 4 fork(s). There are 1 watchers for this library.
              It had no major release in the last 6 months.
              There are 4 open issues and 1 have been closed. There are no pull requests.
              It has a neutral sentiment in the developer community.
              The latest version of llama is current.

            kandi-Quality Quality

              llama has no bugs reported.

            kandi-Security Security

              llama has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

            kandi-License License

              llama is licensed under the GPL-3.0 License. This license is Strong Copyleft.
              Strong Copyleft licenses enforce sharing, and you can use them when creating open source projects.

            kandi-Reuse Reuse

              llama releases are not available. You will need to build from source code and install.
              Build file is available. You can build the component from source.
              Installation instructions, examples and code snippets are available.

            Top functions reviewed by kandi - BETA

            kandi has reviewed llama and discovered the below as its top functions. This is intended to give you an instant insight into llama implemented functionality, and help decide if they suit your requirements.
            • Make a tree
            • Add a new node
            • Add a reticulation
            • Adds a leaf node to the tree
            • Load json from json_object
            • Make a tree
            • Draws the tree
            • Make all of the trees in the tree
            • Make tree object
            • Make a graphviz graph
            • Parse command line arguments
            • Parse the tips from a tree directory
            • Parse a paf file
            • Parse fasta file
            • Check if data directory exists
            • Collapse a clade class
            • Parse a csv file
            • Find SNPs
            • Returns a subtree of the tree
            • Reduce the tree
            • Parse from_metadata argument
            • Extracts lineage information from local tree
            • Load an exusus
            • Make a report from a tree directory
            • Recursively collapse branches of the tree
            • Check the database
            • Check for label and colour fields
            Get all kandi verified functions for this library.

            llama Key Features

            No Key Features are available at this moment for llama.

            llama Examples and Code Snippets

            No Code Snippets are available at this moment for llama.

            Community Discussions


            Problem to fill cards in TailWindCSS on large displays and less cards
            Asked 2021-May-24 at 22:53

            please, I have grid which looks fine on mobile and desktop. But on large displays I want 4 maximum columns. But currently I have only 3 tabs. It's possible please grow these 3 columns fill to container class width in TailWindCSS?

            You know, it doesnt' look nice.

            Otherwise, I can use flexbox of course. This I tried as well but then I need last card align to left side an all other cards must be centers which is impossible in flexbox.

            3 requirements:

            1. Max 4 columns in one row (no problem - solved)
            2. Fill less than 4 columns in large display to full width of container
            3. In small display (640px for width which means any mobile in landscape) must show 2 cards (not just one)

            Problem 1 and 3 is solved. But about problem 2 please? It's possible solve it with tailwind CSS or I need own special classes?

            Here is example of my code with one card:



            Answered 2021-Apr-29 at 16:17

            At the first, you must edit the config file for tailwind

            Source https://stackoverflow.com/questions/67274956


            Only show submit button when 3 validations are checked
            Asked 2021-May-16 at 06:24

            I have a validated form:



            Answered 2021-May-16 at 01:52

            I believe that checking functions like that won't do for the button conditioning since there is no value parameter being passed but in general, I would assume you could initialise a new data property for checks like:

            Source https://stackoverflow.com/questions/67552181


            Error when passing an object to a javascript funtion
            Asked 2021-Apr-09 at 23:02

            I define this variable:



            Answered 2021-Apr-09 at 23:02

            you forgot the braces :

            Source https://stackoverflow.com/questions/67029203


            livewire Quickstart doesnt works
            Asked 2021-Mar-08 at 19:01

            I am trying to perform the Livewire Quickstart. I have installed everything correctly and copied the code as it appears in the example and the dynamic behavior does not work for me. That is, I do not know whether or not it loads the Javascript because nothing appears in the console.

            The html:



            Answered 2021-Mar-08 at 18:11

            In the Blade file of counter wrap it up into a single div element

            Source https://stackoverflow.com/questions/66534851


            How to compare the first letters of a single sentence in python?
            Asked 2021-Feb-27 at 10:53

            Trying to return True if the first letters are same for any 2 words sentence. Is this a good approach:

            Output expected: animal_crackers('Levelheaded Llama') --> True animal_crackers('Crazy Kangaroo') --> False



            Answered 2021-Feb-27 at 10:53

            It's a good way, but you should assign the two words to a variable each, and remove the else line, for better readability.

            Source https://stackoverflow.com/questions/66397829


            How to split a text / string with pattern of upper case letters?
            Asked 2021-Jan-21 at 08:48

            I’m looking to Split a text according to each interlocutor.

            The original text has this form:

            this is a speech text. FIRST PERSON: hi all, thank you for coming. SECOND PERSON: thank you for inviting us. TERCER PERSONA QUE SE LLAMA PEDRO: soy de acuerdo. CUARTA PERSONA (JOHN): Hi. How are you

            I’m searching for a final result like this:


            second column: hi all, thank you for coming | thank you for inviting us | soy de acuerdo | Hi. How are you

            The final result can also be in other format or reshaped.

            The Pattern to split is one or more Upper Word and a ":", but one difficulty is that the pattern in capital letters can have optional characters like: ():,;

            In fact the original text that I am searching to split is this one: https://lopezobrador.org.mx/2021/01/14/version-estenografica-de-la-conferencia-de-prensa-matutina-del-presidente-andres-manuel-lopez-obrador-458/

            I have tried different things using stringr rebus and qdap. First trying this pattern:



            Answered 2021-Jan-21 at 08:38

            You may use strsplit on a pattern that matches either : preceded by a sequence of words with any upper case letters \p{Lu}, spaces (\s) and parentheses (and more if you need), or (|) the space, followed by the same sequence. We want the first element from the resulting list and cleaned with trimws. The result is an alternating pattern of speaker and text, which we can easily convert into a two-column matrix by row.

            Source https://stackoverflow.com/questions/65802238


            Loops running infinitely for big inputs
            Asked 2021-Jan-19 at 02:01

            I am self learner, I am working on a population growth problem, and I came across the issue of loop running infinitely when I enter a big ending number that I want to reach.



            Answered 2021-Jan-19 at 02:00

            For large numbers, n is incremented by more than 1 at each iteration, so it is possible than it becomes larger than j without being equal to it first.

            Change the test while(n != j); to while(n < j);

            Source https://stackoverflow.com/questions/65784470


            Issue with Flexbox content in Row, for React Native
            Asked 2021-Jan-13 at 20:26

            I'm having some issues with FlexBox of an Item in React Native my wish is to have a table using a row with this look:

            (Sorry for my poor Paint Skills but all the text Name and numbers should be center vertical and Horizontally)

            How it Currently looks:

            Now the issue is that as you can see the image gets out of the Card Look and also it is not complete from the Sides.

            Also there are other team Data which the images are bigger or the names are bigger and therefore the images is even further to the left :S


            Finally here is the Code of the Item where I create the Row:



            Answered 2021-Jan-13 at 20:26

            Give your Image resizeMode of "contain" or "cover"

            Source https://stackoverflow.com/questions/65706391


            Error 'no such host' when adding a volume to Terraform AKS cluster on Azure
            Asked 2020-Nov-30 at 03:43

            I'm using the below Terraform file to create an AKS cluster:



            Answered 2020-Nov-30 at 03:43

            Turns out I needed to define the kubernetes provider in the Terraform file - surprised I wouldn't get some kind of a warning for not including it, considering I'm interacting with it's resources.

            Here's what I did to fix it:


            Source https://stackoverflow.com/questions/65031448


            Creating a for loop for BMI calculation in Python
            Asked 2020-Nov-25 at 09:24

            I am having issues with creating a BMI loop for a problem.

            Here is person_data:



            Answered 2020-Nov-25 at 01:23

            You mixed names with person.

            Source https://stackoverflow.com/questions/64997138

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network


            No vulnerabilities reported

            Install llama

            Note: we recommend using llama in the conda environment specified in the environment.yml file as per the instructions above. If you can't use conda for some reason, dependency details can be found in the environment.yml file.
            Clone this repository and cd llama
            conda env create -f environment.yml
            conda activate llama
            python setup.py install
            Type (in the llama environment):. and you should see the help menu of llama printed.


            RequirementsInstall llamaCheck the install workedUpdating llamaUsageOptionsAnalysis pipelineOutputAcknowledgementsReferencesSoftware versions
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