DCC | DCC uses output from the STAR read mapper | Genomics library
kandi X-RAY | DCC Summary
kandi X-RAY | DCC Summary
DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies a series of filters and integrates data across replicate sets to arrive at a precise list of circRNA candidates.
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Top functions reviewed by kandi - BETA
- Wrapper for findcirc
- Find circular coverage in the junction file
- Print chimera line
- Return the genomic distribution of a cigar
- Finds CircSkip junction files for a given Circus
- Determine intervals that overlap the DNA sequence
- Returns a list of junctions for the given CircRNA interval
- Check if junctions files are empty
- Check if a file exists
- Filter circs based on the given circ2filter
- Fix all the 2 chimera in the input fnames
- Count the host gene expression based on the given circuit
- Delete files matching the given pattern
- Filter the counts based on the read counts
- Sort the output
- Annotate a circRNA file
- Ensures a list of BAM files are sorted
- Combine coors
- Map run coordinates to run
- Determine the order of a GTF file
- Select genes from gtf file
- Annotate regions with regions
- Read a circRNA count file
- Combine read counts files into a dictionary
- Remove regions that are not in the given region
- Convert junction files to bamfile
DCC Key Features
DCC Examples and Code Snippets
Community Discussions
Trending Discussions on DCC
QUESTION
I'm trying to write a recursive function (printPath
) inside another function (dijkstraSSSP
), but it gives me a compiler error.
When I run gcc dijkstra.c WGraph.c PQueue.c
, it compiles just fine. However, when I run dcc -Wall -Werror -std=c11 -o dijkstra dijkstra.c WGraph.c PQueue.c
. I got this error:
ANSWER
Answered 2022-Mar-18 at 17:10Move the definition of printPath
outside of the body of dijkstraSSSP
and, to give it access to pred
, change it to accept two parameters instead of one. The additional parameter should have type int *
and should point to the first element of pred
.
In the call, pass pred
for that new parameter. The array pred
will be automatically converted to a pointer to its first element.
QUESTION
I'm trying to make a dash table based on input data but I'm stucking in add more rows to add new inputs. Actually I read this docs and I know that I can directly input in dash table but I want to update dash table from input.
Below is my code:
...ANSWER
Answered 2022-Feb-15 at 05:25tran Try to replace your callback with this callback:
QUESTION
I am running below code in RStudio, and want to create sankey chart with plotly. code runs without error. but the sankey chart is not displayed. what's wrong here?
...ANSWER
Answered 2022-Feb-10 at 08:03You'll need to define the node position by setting the arrangement
argument to stop plotly from automatically justifying the position.
This requires some finessing as you need to specify the coordinates of the nodes. You can find more details here: https://plotly.com/python/sankey-diagram/#define-node-position
CodeQUESTION
This is related to this post but the solution does not work.
I have SSO auth passing in a request header with a username. In a Flask app I can get the username back using flask.request.headers['username']. In Dash I get a server error. Here is the Dash app - it is using gunicorn.
...ANSWER
Answered 2022-Feb-01 at 08:20You can only access the request
object from within a request context. In Dash terminology that means from within a callback. Here is a small example,
QUESTION
I am trying to make charts using JupyterDash but first things first... i can't run simple JupyterDash test via Jupyter Notebook because every time i receive the same error:
...ANSWER
Answered 2022-Jan-30 at 20:52I had the same problem with and old notebook, after some changes, it works again.
Initially, I had the code below:
QUESTION
I am trying to make an interactive plot where a user would select a location, then a time, and then one of a list of parameters. I am able to plot a basic plot of each parameter, but what I want to do is that when multiple parameters from the list are selected, a stacked subplot begins to form for each parameter. I have what I thought was a loop that is correct, but it doesn't seem to run through it to make the subplots.
Looking for some help on how to do add subplots under the conditions of more than one parameter selected.
Code below:
...ANSWER
Answered 2022-Jan-31 at 10:57As per my research, it's not possible to generate a single plot the way you would like to. If you take a look at the plotly subplots documentation, you'll notice that subplots can only be populated with traces that are graph objects. The px.scatter()
figure you're generating for a single parameter is already made up of multiple traces. A subplot cannot be populated with figures, only traces.
First, I adjusted your code to produce subplots. Disregarding your dataframe manipulation and only focusing on the plotly syntax, there are some errors I found in this part:
QUESTION
I'm trying to sort the axis of my chart based on the values in the "sales" column. Once I apply fig.update_layout(yaxis={'categoryorder':'total descending'}) to my figure, the chart no longer removes irrelevant rows when filtering the dataframe by selecting the "099" value for the RadioItems callback option.
code to recreate issue:
...ANSWER
Answered 2022-Jan-11 at 17:30I was able to work around this issue by computing the ranking independently of the graphing step and placing the rankings into a series, rankings
. I then passed the ranked series to
QUESTION
I am new to Plotly Dash. I created some Dashboard in Tableau, in Tableau I have a dashboard with a map and a line chart next to it where I can select locations on the map and the line chart shows me the time series line chart from that sensor. I try to do this in Dash and learn some new tools like Dash since I often used Plotly with its beautiful graphs.
I have internal data on a database with some complex logic where I have the locations on a seperate file, since I want to have as less data as possible I don’t want to include lat und lon in the SQL View. For this question I use data available on the web.
I have sensor measuremt data like no2, no, o3 and more from sensors at different locations. My goal ist to have a map with the locations of the sensors. When I click on a location it should show me the line chart and I want to be able to select as many locations as I want so that I can compare the line charts.
Is this possible? I have the line chart, but I can’t connect the part with the map to work. I will use this as a foundation to include many more graphs like bar charts and so on. The top selector will be a dropdown to select the parameter like no2, pm25. Many thanks in advance.
This is the line chart so far:
...ANSWER
Answered 2021-Dec-27 at 07:15If you are not bound to use a Graph
component for the map, the Map
component from dash-leaflet
supports click events natively. Here is a small example, where map clicks are used to update a graph,
QUESTION
I hate to keep posting about dash\plotly but I cant understand what is going wrong here. I have copied and pasted from the plotly site the code in order to display a pie chart with a drop down menu. When I create the dashboard there is a dropdown menu that shows all the categories but there is no pie chart to be seen. Please help me to understand what is going wrong. Code below:
...ANSWER
Answered 2021-Dec-23 at 22:18I think the main issues with your code were that your generate_chart
function had two arguments, but the @app.callback
decorator had only one input argument, and that for the values
argument in px.pie, you need to pass a column name whose values can be summed together. One issue with using px.pie in this case is that if you sum the values in the 'class' column, the 0s for success will always sum to 0.
Since you explained in your comment that what you really want to display in your pie chart is the count of successes and failures (which are 0s and 1s in the 'class'
column), I thought it would be easiest to sum up the number of 0s and 1s for the particular 'Site'
, and pass the arguments labels=['success','failure']
and values=[success_count, failure_count]
to go.Pie
.
QUESTION
I'm trying to make a donut chart with percentage of completion. Below is my code:
...ANSWER
Answered 2021-Dec-22 at 13:53I haven't checked it in the dash environment, but I did check it plotly. The annotations in the subplot set the respective values in the list. See this in the official reference.
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Install DCC
You can use DCC like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.
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