phase-Extender | python program that uses ReadBack phased haplotypes | Genomics library

by everestial Python Version: 0.1.8 License: No License

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kandi X-RAY | phase-Extender Summary

phase-Extender is a Python library typically used in Healthcare, Pharma, Life Sciences, Artificial Intelligence, Genomics applications. phase-Extender has no bugs, it has no vulnerabilities, it has build file available and it has low support. You can install using 'pip install phase-Extender' or download it from GitHub, PyPI.

Extender for the readbackphased haplotype blocks. A python program to extend the ReadBackPhased haplotype blocks using markov first order transition probabilities and likelihood test. Developed by Bishwa K. Giri in the Remington Lab at the University of North Carolina at Greensboro, Biology department.

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Support

phase-Extender has a low active ecosystem.

It has 8 star(s) with 4 fork(s). There are 3 watchers for this library.

It had no major release in the last 12 months.

phase-Extender has no issues reported. There are 1 open pull requests and 0 closed requests.

It has a neutral sentiment in the developer community.

The latest version of phase-Extender is 0.1.8

Quality

phase-Extender has 0 bugs and 0 code smells.

Security

phase-Extender has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

phase-Extender code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

phase-Extender does not have a standard license declared.

Check the repository for any license declaration and review the terms closely.

Without a license, all rights are reserved, and you cannot use the library in your applications.

Reuse

phase-Extender releases are not available. You will need to build from source code and install.

Deployable package is available in PyPI.

Build file is available. You can build the component from source.

Installation instructions, examples and code snippets are available.

It has 1164 lines of code, 14 functions and 2 files.

It has low code complexity. Code complexity directly impacts maintainability of the code.

Top functions reviewed by kandi - BETA

kandi has reviewed phase-Extender and discovered the below as its top functions. This is intended to give you an instant insight into phase-Extender implemented functionality, and help decide if they suit your requirements.

Perform a phase conversion
Plot histogram for each chromosome
Do multiprocessing
Compute haplotype stats from given data
Return a list of all the samples in the sequence
Plot bar chart
Returns the current memory usage
Compute stats for each chromosome
Plots histogram for each chromosome
Extracts the new haplotype bounding box for each chromosome
Plot all of the chromosomes for each chromosome
Group data by chromosome
Compute the maximum likelihood score
Process consecutive blocks of haplotype blocks
Extend the phase state of a contig
Computes transition probability between two points
Sum a list of vgroups
Argument parser
Convert a set of arguments to aval
Prints the authorization

Get all kandi verified functions for this library.

phase-Extender Key Features

No Key Features are available at this moment for phase-Extender.

phase-Extender Examples and Code Snippets

No Code Snippets are available at this moment for phase-Extender.

Community Discussions

Trending Discussions on phase-Extender

Make subplots of the histogram in pandas dataframe using matpolot library?

QUESTION

Make subplots of the histogram in pandas dataframe using matpolot library?

Asked 2019-Apr-03 at 13:39

I have the following data separate by tab:

...

ANSWER

Answered 2018-May-24 at 08:06

Your first problem comes from the fact that you are using plt.ylabel() at the end of your loop. pyplot functions act on the current active axes object, which, in this case, is the last one created by subplots(). If you want your label to be centered over your subplots, the easiest might be to create a text object centered vertically in the figure.

Source https://stackoverflow.com/questions/50499223

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install phase-Extender

OR, you can install latest versions individually by:.
Clone this repo.
Make virtual env for python and install requirements.
Run help on phase extender