edge | Efficiently keep track of changes to genomes | Genomics library

 by   ginkgobioworks Python Version: v1.0.1 License: MIT

kandi X-RAY | edge Summary

kandi X-RAY | edge Summary

edge is a Python library typically used in Artificial Intelligence, Genomics, Docker applications. edge has no bugs, it has no vulnerabilities, it has build file available, it has a Permissive License and it has low support. You can install using 'pip install edge' or download it from GitHub, PyPI.

Efficiently keep track of changes to genomes
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            kandi-support Support

              edge has a low active ecosystem.
              It has 31 star(s) with 3 fork(s). There are 17 watchers for this library.
              OutlinedDot
              It had no major release in the last 12 months.
              There are 4 open issues and 7 have been closed. On average issues are closed in 42 days. There are 4 open pull requests and 0 closed requests.
              It has a neutral sentiment in the developer community.
              The latest version of edge is v1.0.1

            kandi-Quality Quality

              edge has 0 bugs and 0 code smells.

            kandi-Security Security

              edge has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.
              edge code analysis shows 0 unresolved vulnerabilities.
              There are 0 security hotspots that need review.

            kandi-License License

              edge is licensed under the MIT License. This license is Permissive.
              Permissive licenses have the least restrictions, and you can use them in most projects.

            kandi-Reuse Reuse

              edge releases are available to install and integrate.
              Deployable package is available in PyPI.
              Build file is available. You can build the component from source.
              edge saves you 4118 person hours of effort in developing the same functionality from scratch.
              It has 8748 lines of code, 477 functions and 100 files.
              It has medium code complexity. Code complexity directly impacts maintainability of the code.

            Top functions reviewed by kandi - BETA

            kandi has reviewed edge and discovered the below as its top functions. This is intended to give you an instant insight into edge implemented functionality, and help decide if they suit your requirements.
            • Parse request arguments
            • Parse arguments
            • Validates the annotations in the cassette
            • Add an argument
            • Calculate pcr
            • Blast a genome
            • Run blastn blastn
            • Computes the product of two primer sequences
            • Update the profile
            • Perform a PCR from a genome
            • Perform recombination
            • Annotate a sequence of annotations
            • Run a single mutation
            • Annotate the given list of annotations
            • Annotates a fragment
            • Return a list of allowed sites
            • Annotate a fragment
            • Perform replacement
            • Add an argument argument
            • Import genome files
            • Create a new fragment
            • Performs the replacement of the original fragment
            • Batch query
            • Create a new fragment with the given sequence
            • Run the recombination
            • Check if a genome exists
            • Handles GET requests
            • Import GFF files
            Get all kandi verified functions for this library.

            edge Key Features

            No Key Features are available at this moment for edge.

            edge Examples and Code Snippets

            No Code Snippets are available at this moment for edge.

            Community Discussions

            QUESTION

            How to fade edges of background image of element to blend in with the main background image?
            Asked 2021-Jun-16 at 03:34

            I've come across an issue of trying to fade the edges of the background image of a div so that it looks like it's blending with the background image of the full site (so the background image applied to the body).

            ...

            ANSWER

            Answered 2021-Jun-16 at 02:49

            You can use the background as gradient where the edges are rgba(0,0,0,0). This way it will smoothly blend with background. But this will not work for images. For images You will have to a div of background color and rgba(0,0,0,0) in gradient with color facing outward.

            Source https://stackoverflow.com/questions/67995632

            QUESTION

            how to get jstree instance from iframe source?
            Asked 2021-Jun-16 at 03:07

            I have prepare 2 tree view in separate iframe using jstree. The right tree view should control the left tree view. When user click one one the list in right tree view, the respective item folder will open and selected on left tree view. I can make it happen using div in single page. I control the left tree view using instance of left tree view in right jstree div var instance = $('#left').jstree(true);.

            ...

            ANSWER

            Answered 2021-Jun-16 at 03:07

            I had used document.getElementById('1').contentWindow.jQuery('#left').jstree(true); to get instance from iframe with id='1'. In order to listen to right iframe(with id='2') if any menu has been clicked, I used document.getElementById('2').contentWindow.jQuery('#right').on("changed.jstree",function(e,data){}). I get the instance of left iframe within this function. By using this instance, I has deselect previous selection, select current selection, and open children of selected menu.

            index-12.html

            Source https://stackoverflow.com/questions/67933193

            QUESTION

            How can I avoid bundling Vuetify and use from CDN?
            Asked 2021-Jun-16 at 01:31

            I'm trying to decrease the bundle size of my Vue project, which scaffolded by the vue-cli, by using CDN of firebase, Vue, and Vuetify.

            So, I've added links of these CDN in public/index.html as follow:

            ...

            ANSWER

            Answered 2021-Jun-16 at 01:31

            If you are using vuetify from vue-cli-plugin-vuetify (vue add vuetify), treeshaking and auto component import is enabled by default, by using vuetify-loader.

            If you look into the source code of vue-cli-plugin-vuetify, it only uses vuetify-loader if it is present in your package.json. So removing vuetify-loader from package.json should disable this behavior.

            Source https://stackoverflow.com/questions/67995021

            QUESTION

            How do i add new image on the new card
            Asked 2021-Jun-15 at 19:05

            I'm currently learning HTML, CSS, and JavaScipt. I'm trying to make a basic project, but I'm having problems with adding a new image on the new card. When I click on the 'add item' button, I create a new card with image. However, when I add another card for the second time, my image from the first card that I created will disappear. Can someone help me on how to fix this solution. Thank you.

            ...

            ANSWER

            Answered 2021-Jun-15 at 19:05

            Rather than using two different function, one for adding card image and one for card content, try combining both of them.. here use the code for your reference.

            Source https://stackoverflow.com/questions/67991548

            QUESTION

            Apereo CAS HTML template does not seem to load
            Asked 2021-Jun-15 at 18:37

            So I initialized CAS using cas-initializr with the following command inside the cas folder:

            ...

            ANSWER

            Answered 2021-Jun-15 at 18:37

            Starting with 6.4 RC5 (which is the version you run as of this writing and should provide this in your original post):

            The collection of thymeleaf user interface template pages are no longer found in the context root of the web application resources. Instead, they are organized and grouped into logical folders for each feature category. For example, the pages that deal with login or logout functionality can now be found inside login or logout directories. The page names themselves remain unchecked. You should always cross-check the template locations with the CAS WAR Overlay and use the tooling provided by the build to locate or fetch the templates from the CAS web application context.

            https://apereo.github.io/cas/development/release_notes/RC5.html#thymeleaf-user-interface-pages

            Please read the release notes and adjust your setup.

            All templates are listed here: https://apereo.github.io/cas/development/ux/User-Interface-Customization-Views.html#templates

            Source https://stackoverflow.com/questions/67979701

            QUESTION

            Not getting Cascadia Code PL in Powershell
            Asked 2021-Jun-15 at 15:24

            I wanted to get started with posh and oh-my-posh so I installed them according to this article. Microsoft docs. I got the theme but the edges didn't had that arrow(that coolness).

            I then downloaded the windows terminal and edited the setting.json there with

            ...

            ANSWER

            Answered 2021-Feb-19 at 17:57

            If I understand correctly, there are two parts to the question.

            Changing the PowerShell Window Font

            To do this, right-click your PowerShell window and head to "Properties"

            There, you can choose the header "Font" and change your font to Cascadia Code PL".

            This should fix the problem. If you still experience some weird characters, you might need to install a Nerd Font instead.

            Changing the VS Code Terminal Font

            To use the font in the VS Code Terminal, head to Settings.

            Searching for "integrated terminal font family" should bring up the setting you need to edit. Here, add your font 'Cascadia Code PL' on the very front of the setting and save.

            Integrated:Font Family"" />

            You should now be able to open a terminal and use the PL prompt.

            Source https://stackoverflow.com/questions/66042480

            QUESTION

            How can I find to access to GPUs via Tensorflow in PyCharm?
            Asked 2021-Jun-15 at 14:43

            I have a problem about not accessing GPU in PyCharm and I use NVIDIA as GPU.

            I installed tensorflow-gpu in Python Interpreter of Setting part in Pycharm and then I run the code but I still cannot access it.

            I wonder if I should use CUDA library? How can I fix it?

            Here is my code snippet which is shown below.

            ...

            ANSWER

            Answered 2021-Jun-14 at 11:14

            I fixed my issue.

            Here are the steps of solving that issue.

            1 ) Download CUDA from https://developer.nvidia.com/cuda-downloads

            2 ) Download CUDNN from https://developer.nvidia.com/rdp/cudnn-download

            3 ) Copy bin,include and lastly lib from CUDNN zip file and paste it C:\Program Files\NVIDIA GPU Computing Toolkit\CUDA{version}

            4 ) Then run the .py code in PyCharm and it perceives GPU at last.

            Source https://stackoverflow.com/questions/67952801

            QUESTION

            Android Studio Flutter - WARNING: Another emulator is still running - windows 10
            Asked 2021-Jun-15 at 14:21

            I am having problems restarting the emulator after turning it off. Restarting android studio - doesn't help. Restarting my computer helps. I also cannot find and [stop this process] through the task manager. So that I can not reboot. By the way, the error is displayed with a typo. Help. Who faced such a problem, how to solve it?

            ...

            ANSWER

            Answered 2021-Jun-15 at 14:21

            On Windows, the software that runs the Android Emulator is called "qemu-system-x86_64.exe".

            Try to kill this software. You can use the built-in taskkill utility from within the Command Prompt:

            1. Open the Command Prompt (Type in CMD into the Windows search)
            2. Enter: taskkill /F /IM "qemu-system-x86_64.exe" /T

            Explanation of the taskkill command:

            Source https://stackoverflow.com/questions/67987153

            QUESTION

            External Css or Assets from local storage not working on Node Application
            Asked 2021-Jun-15 at 12:36

            Created a server.js which indicates to index.html file.(server.js and index.html locates on the same folder). In that html I couldn't use any styling from external css file or any assests from local storage. But inline css & images from internet is working fine.

            server.js

            ...

            ANSWER

            Answered 2021-Jun-15 at 12:36

            All of your files are inside frontEnd folder. Like in here:

            Also you don't serve static files anywhere in your code. It should be something like in the docs:

            app.use(express.static('public'))

            Source https://stackoverflow.com/questions/67986328

            QUESTION

            Mongo Aggregation where query is having child elements that create root
            Asked 2021-Jun-15 at 11:19

            I have a query that is getting generated at the backend where in the project the path is building based on the root element.

            ...

            ANSWER

            Answered 2021-Jun-15 at 11:19
            • $objectToArray to convert Source object to array key-value format
            • $filter to iterate loop of above converted array and filter by value is not null
            • $arrayToObject convert key-value back to object
            • $addFields to get en from desscription
            • $cond to check if its empty object then remove otherwise return

            Source https://stackoverflow.com/questions/67971308

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install edge

            You can install using 'pip install edge' or download it from GitHub, PyPI.
            You can use edge like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.

            Support

            For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .
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            https://github.com/ginkgobioworks/edge.git

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            gh repo clone ginkgobioworks/edge

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            git@github.com:ginkgobioworks/edge.git

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