svtools | Tools for processing and analyzing structural variants | Genomics library

by hall-lab Python Version: 0.5.1 License: MIT

X-Ray Key Features Code Snippets Community Discussions(1)Vulnerabilities Install Support

kandi X-RAY | svtools Summary

svtools is a Python library typically used in Artificial Intelligence, Genomics applications. svtools has no bugs, it has no vulnerabilities, it has build file available, it has a Permissive License and it has low support. You can install using 'pip install svtools' or download it from GitHub, PyPI.

svtools is a suite of utilities designed to help bioinformaticians construct and explore cohort-level structural variation calls. It is designed to efficiently merge and genotype calls from speedseq sv across thousands to tens of thousands of genomes.

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Support

svtools has a low active ecosystem.

It has 99 star(s) with 44 fork(s). There are 19 watchers for this library.

It had no major release in the last 12 months.

There are 48 open issues and 105 have been closed. On average issues are closed in 192 days. There are 1 open pull requests and 0 closed requests.

It has a neutral sentiment in the developer community.

The latest version of svtools is 0.5.1

Quality

svtools has no bugs reported.

Security

svtools has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

License

svtools is licensed under the MIT License. This license is Permissive.

Permissive licenses have the least restrictions, and you can use them in most projects.

Reuse

svtools releases are available to install and integrate.

Deployable package is available in PyPI.

Build file is available. You can build the component from source.

Installation instructions, examples and code snippets are available.

Top functions reviewed by kandi - BETA

kandi has reviewed svtools and discovered the below as its top functions. This is intended to give you an instant insight into svtools implemented functionality, and help decide if they suit your requirements.

Return a dict containing the command - line arguments
Build a ConfigParser from a root
Get the project root directory
Extract version information from the VCS
Recluster dup data
Calculate the sigma map
Calculate the mu map for a given j
Run reclassifier
Execute a VCF file
Parse a VCF file stream
Parse a BED alt_string
Extract version information from the current working directory
Render a git description
Create the versioneer config file
Install versioneer
Create a command parser
Verify the download against the local md5
Pad the breakpoint
Compare two strings
Get keywords from a git repository
Download a file from Google Cloud Storage
Computes the overlap probability between two intervals
Performs a recluster on the topology
Scans the setup py
Parse VCF record
Return the key of the vcf line key

Get all kandi verified functions for this library.

svtools Key Features

No Key Features are available at this moment for svtools.

svtools Examples and Code Snippets

No Code Snippets are available at this moment for svtools.

Community Discussions

Trending Discussions on svtools

ERR_INSECURE_RESPONSE + subdomains

QUESTION

ERR_INSECURE_RESPONSE + subdomains

Asked 2017-Apr-02 at 19:34

I need help to understand if Chrome behaviour is OK or it's due to my mistake. I'm using selfsigned-certificates and subdomains.

From https://preproduser.svtools.tp.XXX.it/#!/login/ there is an Ajax query to another subdomain which returns error:

...

ANSWER

Answered 2017-Apr-02 at 19:34

While you can override the warning about ERR_CERT_AUTHORITY_INVALID it will only override the warning for exactly this certificate at exactly this hostname and not automatically trust this certificate for any other hosts.

Just imagine that this would be otherwise: in this case some man in the middle attacker could use a certificate to intercept the connection to some unimportant host where many would just override the warning because there are no sensitive data. Once this is done the attacker could use the same certificate (now trusted by the browser) to intercept connections to important hosts. That's why any certificate exemption is only for the specific hostname where the certificate was explicitly exempted for.

Source https://stackoverflow.com/questions/43172398

Community Discussions, Code Snippets contain sources that include Stack Exchange Network