TOGA | infer Orthologs from Genome Alignments ) : implements | Genomics library
kandi X-RAY | TOGA Summary
kandi X-RAY | TOGA Summary
TOGA is a new method that integrates gene annotation, inferring orthologs and classifying genes as intact or lost. TOGA implements a novel machine learning based paradigm to infer orthologous genes between related species and to accurately distinguish orthologs from paralogs or processed pseudogenes. This tutorial explains how to get started using TOGA. It shows how to install and execute TOGA, and how to handle possible issues that may occur.
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Top functions reviewed by kandi - BETA
- Parse a cesar bdb file .
- Realign exons .
- Return a dict of projection classes .
- Scans a FASTA file for mutations in the given codons .
- parse command line arguments
- Generate a SVG file for the given mutations .
- Performs inact_mutations on CESAR output .
- Classify a single chain .
- Runs sear jobs
- Parse the SCAR output .
TOGA Key Features
TOGA Examples and Code Snippets
Community Discussions
Trending Discussions on TOGA
QUESTION
I wanted to make a 9x9 table where the value can be inserted by the user. As you can see in the code that I have used an awful lot of statements for fulfilling this purpose. I had to make each input separately. I was hoping if there was a way for me to use for loop or something else to make these statements go away. I don't know if it is even possible to do this. Please help me out.
Also, can anyone tell how to keep a button in the center of the application? I had to use padding for this function. Is there any other way? I tried style=Pack(alignment=CENTER) but didn't work out.
ANSWER
Answered 2020-Oct-27 at 22:26Yep, a simple for loop and list or dictionary could help you out. Maybe something like this to replace the input prompts?
QUESTION
Is there a way to create a dash-plotly app for android or IOS? I've read some of the Beeware documentation, but I still wouldn't know how to take my dashboard and include it into the app.py default file:
...ANSWER
Answered 2020-Oct-21 at 10:49To deploy your briefcase code into an apk, first open command prompt in the directory of your project and then in the command window type:
QUESTION
I have read the recommended answers none of which pertain to my subject.
A database about surgeries performed contains lots of tables and these lots of fields: table dat_patient (patients, abbreviated "p") numbers about 100, and table dat_optherapie (surgeries, abbreviated "op") about 1,000 fields. Here is a description of the fields I use for my query:
p.ID is the autoincremental patient index which is correlated to op.patID in the surgery table.
op.OP1OPVerfahren contains the surgical procedure each of which can have 29 string values (from "1" to "28" and "99").
op.OP1Datum contains the date of surgery.
op.revision shows how many revisions of a given data set there are (important for tracking changes).
I now want to enumerate all different surgical procedures (29) performed in a table. Embedding the SQL query code into my PHP frame works fine:
Basic SQL query:
...ANSWER
Answered 2020-Jul-15 at 20:10OWN SOLUTION:
Of course, the above-mentioned agglomeration of one SUM(...) after another does not work as this builds up an array of SQL query result sets in rows which do display the associated MIN, MAX and AVG duration for the type (not the sum!) of surgery performed but cannot be displayed without further ado using PHP.
The resulting SQL query code is like this:
QUESTION
I've been trying to convert my commands to on_message events as in this case, it saves up space and it is cleaner to look at. However I can't seem to use @cooldown() anymore as I have to use commands.Cog.listener()
Is there any other way to get a cooldown working? My code is listed below
...ANSWER
Answered 2020-Jun-25 at 11:56You can limit the amount of times an event is used by using a time parameter or a count parameter. You won't be able to do it per user very easily. If you're wanting a cooldown per user, I would highly recommend switching back to a command approach. This may help. How can I limit the on_message replies (Discord Python bot)
QUESTION
What I tried:
...ANSWER
Answered 2018-Oct-04 at 18:14I had the same problem. I followed the instructions on pygobject web.
- install homebrew
- Execute brew install pygobject3 --with-python@2 gtk+3
- Run python3 hello.py
Everything is fine now (note I use python3 not python for the test) :
QUESTION
I am creating a gui app for GTK with python-toga and was wondering if it was possible to create a toga.Button() with an icon. I've tried using toga.Command() to create a command which has an option to add an icon but adding the command to a box doesn't work.
This is the part of my code that doesn't work:
...ANSWER
Answered 2020-Apr-13 at 12:30Check out this minimal example (app.py):
QUESTION
I'm trying to build an android app, from Python using gradle and beeware.
EDIT: I'm following tutorial 0 on the briefcase tutorial: https://briefcase.readthedocs.io/en/latest/tutorial/tutorial-0.html
I have already tried switch toga versions and switching VOC versions. These both did not work.
This is where it says the error is:
...ANSWER
Answered 2019-Jun-27 at 12:39You're running voc from Python3.7 (Programs\Python\Python37-32\Scripts\voc.exe), but your interpreter is using the libraries from python 3.6 (Python\Python36\lib\re.py).
QUESTION
I know that the only way to build for cross platform in Python is Kivy but I recently heard of the Beeware project and this tool called Toga. As much as I know its still in its early stage and a lot of people aren't familiar with it as well but there are a couple of basic tutorials on the website. It looks very promising but I don't know about its future and the issues I might face if I start working on it as it might have a lot of bugs as of now. I read on the docs that Toga lets you build Native cross platform apps, are Kivy apps not native? Are they like Hybrid apps, like the ones you build on Phonegap? Thanks
...ANSWER
Answered 2017-Aug-30 at 15:41Toga achieves its gui by mapping the Toga api to native platform widgets on different systems. This means that the apps will automatically look and behave like other 'native' apps from that system. In contrast, Kivy uses opengl for drawing, using its own widget toolkit. This means that by default it looks and behaves exactly the same on all different platforms. You can customise it, but in practice it's very hard to get something that really acts just like another framework.
Both methods have advantages and disadvantages. Kivy is quite flexible and portable, since you can use opengl just about anywhere, and the harder part is probably compiling Kivy and Python itself. On the other hand, Toga's method is the only way to get something that really acts like a native app, and also possibly sidesteps some Kivy problems like relatively slow startup on Android. That said, I'm not sure if the need to wrap different widgets explicitly means it may be less flexible, compared to Kivy's drawing API that can achieve basically anything without special platform support.
QUESTION
I am trying to extract two parts from Local html file located in C:\Sample.html And I used @QHarr code from another thread like that
...ANSWER
Answered 2019-Jul-14 at 10:17I have used the CSS Selector that returns all the value using h2[class='course-player__chapter-item__title _chapter-item__title_d57kmg'] then split the output into two columns
QUESTION
I have 50 databases for 50 centers to document surgical procedures performed. I can count the number of these procedures per center easily:
...ANSWER
Answered 2019-Mar-16 at 14:24Well, the solution after some fiddling with the "", '' and `` characters is as such:
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