nlm | 知识图谱存储与查询。 | Graph Database library

by hscspring Python Version: Current License: MIT

X-Ray Key Features Code Snippets Community Discussions(10)Vulnerabilities Install Support

kandi X-RAY | nlm Summary

nlm is a Python library typically used in Database, Graph Database, Neo4j applications. nlm has no bugs, it has no vulnerabilities, it has build file available, it has a Permissive License and it has high support. You can download it from GitHub.

Memory for Knowledge Graph, using Neo4j. 知识图谱存储与查询。

Support

Quality

Security

License

Reuse

Support

nlm has a highly active ecosystem.

It has 43 star(s) with 12 fork(s). There are 2 watchers for this library.

It had no major release in the last 6 months.

nlm has no issues reported. There are no pull requests.

It has a negative sentiment in the developer community.

The latest version of nlm is current.

Quality

nlm has 0 bugs and 0 code smells.

Security

nlm has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

nlm code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

nlm is licensed under the MIT License. This license is Permissive.

Permissive licenses have the least restrictions, and you can use them in most projects.

Reuse

nlm releases are not available. You will need to build from source code and install.

Build file is available. You can build the component from source.

Installation instructions, examples and code snippets are available.

nlm saves you 811 person hours of effort in developing the same functionality from scratch.

It has 1863 lines of code, 156 functions and 18 files.

It has medium code complexity. Code complexity directly impacts maintainability of the code.

Top functions reviewed by kandi - BETA

kandi has reviewed nlm and discovered the below as its top functions. This is intended to give you an instant insight into nlm implemented functionality, and help decide if they suit your requirements.

Convert a Graphviz query into a Graphviz equivalent
Convert a relation to a GraphRelation object
Convert a node to a GraphNode
Return a graph output
Convert a graphobj to a dict
Process a single JSON file
Create a node from a dictionary
Start a server
Add RPC method to the given server
Build a GraphOutput protobuf
Recallocate a graph node
Recallocate a GraphRelation

Get all kandi verified functions for this library.

nlm Key Features

No Key Features are available at this moment for nlm.

nlm Examples and Code Snippets

No Code Snippets are available at this moment for nlm.

Community Discussions

Trending Discussions on nlm

How to search a large data structure and return the series of keys/arrays that gives a particular value?

RSelenium Drop-Down Menu Selection

How do I create a non-stacked barplot with data labels using ggplot2 in R?

Trying to check if a tag exists in XML before parsing

TypeError: __init__() got an unexpected keyword argument 'service' error using Python Selenium ChromeDriver with company pac file

Getting the content of a table on the website with Selenium and Python

Getting a number from pubchem site with Selenium

Scrape a library of literature with rvest

Obtaining data from NCBI gene database with R

Add in URL hyperlink to text returned upon click in plotly dash

QUESTION

How to search a large data structure and return the series of keys/arrays that gives a particular value?

Asked 2022-Mar-25 at 23:18

I have downloaded a complex JSON data structure from https://api.ncbi.nlm.nih.gov/variation/v0/beta/refsnp/8127500

it is so large, I cannot search it easily.

I have tried Data::Search, but it does not return what I need.

How can I search a data structure/hash, e.g. the minimal working example,

...

ANSWER

Answered 2022-Mar-25 at 23:18

#! /usr/bin/perl
use warnings;
use strict;
use feature qw{ say };

sub walk { _walk(@_, []) }

sub _walk {
    my ($value, $s, $path) = (@_);
    my @r;
    if (ref $s) {
        if (ref [] eq ref $s) {
            for my $i (0 .. $#$s) {
                my $p = walk($value, $s->[$i], [@$path, $i]);
                push @r, @$p if $p;
            }
        } elsif (ref {} eq ref $s) {
            for my $k (keys %$s) {
                my $p = walk($value, $s->{$k}, [@$path, $k]);
                push @r, @$p if $p;
            }
        }
        return \@r

    } else {
        return [$path] if $s == $value;
    }
}

my %d = (a => {b => [0, 1, 2]},
         c => [0, 1, [{d => 2, e => 3}]]);

my $paths = walk(2, \%d, []);
say "@$_" for @$paths;

Source https://stackoverflow.com/questions/71623817

QUESTION

RSelenium Drop-Down Menu Selection

Asked 2022-Mar-25 at 03:44

I'm trying to use RSelenium to select an option from a drop-down menu, and am using XPath to locate the element I'm interested in.

The website is: https://pubmed.ncbi.nlm.nih.gov/?term=%282019-03-01%5BDate+-+Publication%5D+%3A+2019-03-31%5BDate+-+Publication%5D%29+AND+%28Hearing+Loss%5BMeSH+Terms%5D%29&size=200 and I'm trying to save the results in PMID format. My code selects the Format box, but when I want it to click the PMID option, it doesn't do so. Any help would be greatly appreciated. Below is my code:

...

ANSWER

Answered 2022-Mar-25 at 03:44

Get PMID of all articles of the current page through,

Using rvest

Source https://stackoverflow.com/questions/71610189

QUESTION

How do I create a non-stacked barplot with data labels using ggplot2 in R?

Asked 2022-Mar-21 at 22:22

I am processing this dataset (bottom of the page) in R for a project. First I load in the data:

...

ANSWER

Answered 2022-Mar-21 at 22:22

You could do:

Source https://stackoverflow.com/questions/71563829

QUESTION

Trying to check if a tag exists in XML before parsing

Asked 2022-Feb-01 at 18:10

I need to check the existence of certain tags in an XML file before parsing it; I'm using Element Tree in Python. Reading here, I tried writing this:

...

ANSWER

Answered 2022-Feb-01 at 18:10

When parsing this XML document variable tree already points to element OA, so when searching for this element expression tree.findall('OA') returns an empty list and loop isn't executed. Remove that line and code will be executed:

Source https://stackoverflow.com/questions/70945215

QUESTION

TypeError: __init__() got an unexpected keyword argument 'service' error using Python Selenium ChromeDriver with company pac file

Asked 2022-Jan-18 at 18:35

I've been struggling with this problem for sometime, but now I'm coming back around to it. I'm attempting to use selenium to scrape data from a URL behind a company proxy using a pac file. I'm using Chromedriver, which my browser uses the pac file in it's configuration.

I've been trying to use desired_capabilities, but the documentation is horrible or I'm not grasping something. Originally, I was attempting to webscrape with beautifulsoup, which I had working except the data I need now is in javascript, which can't be read with bs4.

Below is my code:

...

ANSWER

Answered 2021-Dec-31 at 00:29

If you are still using Selenium v3.x then you shouldn't use the Service() and in that case the key executable_path is relevant. In that case the lines of code will be:

Source https://stackoverflow.com/questions/70534875

QUESTION

Getting the content of a table on the website with Selenium and Python

Asked 2022-Jan-04 at 22:30

When I go to the web address in the code I don't get the contents from "Synonyms" section. It does the selection, but takes it as a list and does not output the text content.

...

ANSWER

Answered 2022-Jan-04 at 19:21

You need to get element's text explicitly

Source https://stackoverflow.com/questions/70583875

QUESTION

Getting a number from pubchem site with Selenium

Asked 2022-Jan-01 at 07:39

I'm doing a search on the pubchem site with the code below. I need to get the "Compound CID:" number from the screen from the search result but I couldn't get it. I need help on this.

...

ANSWER

Answered 2022-Jan-01 at 07:39

To print the text 6342 you can use either of the following Locator Strategies:

Using css_selector and get_attribute("innerHTML"):

Source https://stackoverflow.com/questions/70547384

QUESTION

Scrape a library of literature with rvest

Asked 2021-Dec-16 at 14:34

I am learning rvest.

I intend to scrape my search results. Here is the webpage,

https://pubmed.ncbi.nlm.nih.gov/?term=eliminat+matrix+effect+HPLC-ms%2Fms&filter=years.2013-2022&size=200

I looked up html_nodes(). There is no what I have seen on the webpage.

What could I do?

Here is the 'body'.

...

ANSWER

Answered 2021-Dec-14 at 05:19

We can get the title of search results by

Source https://stackoverflow.com/questions/70312915

QUESTION

Obtaining data from NCBI gene database with R

Asked 2021-Dec-14 at 11:55

Rentrez package

I was discovering rentrez package in RStudio (Version 1.1.442) on a lab computer in Linux (Ubuntu 20.04.2) according to this manual. However, later when I wanted to run the same code on my laptop in Windows 8 Pro (RStudio 2021.09.0 )

...

ANSWER

Answered 2021-Dec-14 at 11:55

The node pre is not a valid one. We have to look for value inside class or 'id` etc.

webElem$sendKeysToElement(list(key = "end") you don't need this command as there is no necessity yo scroll the page.

Below is code to get you the sequence of genes.

First we have to get the links to sequence of genes which we do it by rvest

Source https://stackoverflow.com/questions/70317932

QUESTION

Add in URL hyperlink to text returned upon click in plotly dash

Asked 2021-Oct-24 at 18:53

This code generates a network as expected using plotly dash:

...

ANSWER

Answered 2021-Oct-24 at 18:53

Returning active URL links upon node selection

You can just use the Dash html.A component, no?:

Source https://stackoverflow.com/questions/69697072

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install nlm

IMPORTANT: only support Python3.7+. The document is under ./docs which can be generated by Sphinx, just run make html.
Step 1: Install dependencies # use pipenv $ pipenv install --dev # do not have pipenv $ python3 -m venv env $ source env/bin/activate $ pip install -r requirements.txt
Step 2: Setup a neo4j database $ docker run --rm -it -p 7475:7474 -p 7688:7687 neo4j Here we use another two ports for play and test. When the docker has been set up, you should open http://localhost:7475/browser/, modify the port to 7688, input the password neo4j and then change the password to password
Step 3: Running the tests $ pipenv shell $ pytest This step will add 8 nodes and relationships to your Neo4j database.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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