pepper | PEPPER-Margin-DeepVariant | Genomics library
kandi X-RAY | pepper Summary
kandi X-RAY | pepper Summary
PEPPER-Margin-DeepVariant
Support
Quality
Security
License
Reuse
Top functions reviewed by kandi - BETA
- polish a BAM file
- Call consensus function
- Polishes the CPU setup
- Get a list of file paths from a directory
- Run small batch of small chunks
- Calculates the number of occurrences of a given sequence
- Find the confident positions in the alignment
- Calculate aligner aligned sequences
- Train models
- Add polish options
- Merge VCF records
- Add command line arguments to the given parser
- Set parameters based on options
- Argument for training images
- Generate a pileup file
- Run CMake
- Add test arguments to the given parser
- Make train images
- Predict using pytorch model
- Generate images for each chromosome
- Arguments for find candidates
- Add command line arguments for make images
- Arguments for run inference
- Call variant calling
- Add training arguments to the given parser
- Generate image and save to file
pepper Key Features
pepper Examples and Code Snippets
Community Discussions
Trending Discussions on pepper
QUESTION
I'm trying to remove single word strings from a dataframe (ou
) and move it to another dataframe (removedSet
and allowedSet
), and then to a csv (names.csv
and removed.csv
). I am able to filter out specific strings, but I am having trouble removing single words from the dataframe I just made allowedSet
.
So I need to use the two dataframes I just made and check them for the single word strings. I want to append the single words to the dataframe with removed strings removedSet
and remove the single words from the other dataframe with only full names allowedSet
.
This is my desired output COMPnames.csv
:
ANSWER
Answered 2022-Mar-28 at 14:31IIUC, use a regex with word boundaries and groupby
to save your files:
QUESTION
I'm still young to coding and cannot figure out better functions or results to some tasks by myself very often.
I have a question on tracking the original string after using str_extract_all
for a specific pattern.
Here is an example data called "fruit".
index Fruit 1 apple 2 banana 3 strawberry 4 pineapple 5 bell pepperI used str_extract_all(fruit, "(.)\\1")
to extract duplicated consonants, and get "pp", "rr", "pp", "ll", "pp".
Also tracked the original string (of those extracted results) by str_subset(fruit, "(.)\\1")
. Here's what I get.
However, I want to know where "each" extracted result is from. Therefore, using str_subset
cannot capture those results which are from the same string. The following dataframe is what I expect to gain.
I'm not sure if I explain my question clearly. Any feedbacks and ideas will be appreciate.
...ANSWER
Answered 2022-Mar-24 at 11:24Your code already did what you want. You just need to create an extra column to store the output of str_extract_all
, like the following:
Since str_extract_all()
returns a list, we'll need to unnest
the list to become rows.
The final line of the code is to create a consecutive index (since "banana" is gone, index 2 will also be gone).
QUESTION
I am trying to wrap text under an image using flexbox only, i have tried almost everything i can come up with, using flex-grow, flex-basis, flex-shrink. I've put all of the text and image into their own seperate div classes but still that didn't seem to help. The image is aligned with the text but the text won't wrap, the only way i got the image to align with the text is by using "text-align" im not sure why or how text align moved an IMAGE but it did.
...ANSWER
Answered 2022-Mar-19 at 08:21The text does not overlap image width, you have to set the width for the parent div separately from the image so that the text will have the same width
QUESTION
Let's say I have list of all OUs (AllOU.csv):
...ANSWER
Answered 2022-Mar-15 at 19:16Read your file first and create a list of objects. [{CN:’Clark Kent’,OU:’news’,dc:’company’,dc:’com’},…{…}]
Once you have created the list you can convert it to data frame and then apply all the grouping, sorting and other abilities of pandas.
Now to achieve this, first read your file into a variable lets call var filedata=yourFileContents. Next split filedata. var lines = filedata.split(‘\n’) Now loop over each lines
QUESTION
n00b here!
I have managed to assemble JavaScript code and I don't understand why is not working correct.
The code is designed to calculate the difference between a given date and today's date. I guess my logic in the script is not correct as no error show in the console.
Here is the code:
...ANSWER
Answered 2022-Feb-03 at 23:26QUESTION
Here is are my menu items, and I want to filter only the Drinks in a drink Component, I am displaying both the 'Drinks' and 'Eat' under categories. And my goal is to only filter and extract the 'Drinks' as I am displaying the drinks on its own component.
Here is my data:
...ANSWER
Answered 2022-Jan-24 at 00:01MenuItems.filter((item) => "Drinks")
return always true
What you should be doing is comparing the category to drinks.
MenuItems.filter((item) => item.category === "Drinks")
QUESTION
I came across an issue is I noticed not all website link can be shown on the Pepper Tablet, is that right? for example, I want to show this link: "https://rt-webchatapp-v5.netlify.app/" which I developed for users to register, but on the tablet, it is always white screen. Can anyone explain it? how can I show above link on Pepper Tablet?
Thanks in advance.
this website is I developed for my research, I have been used for at least 6 months, I am hopeing I can use on Pepper robot directly.
...ANSWER
Answered 2022-Jan-15 at 07:47The webview on Pepper's tablet is old. It uses Javascript 1.7 and might not support newest javascript features.
QUESTION
My goal is to cover a face with circular noise (salt and pepper/black and white dots), however what I have managed to achieve is just rectangular noise.
I found the face coordinates (x,y,w,h) = [389, 127, 209, 209]
And using this function added noise
Like:
ANSWER
Answered 2022-Jan-12 at 16:13Bitwise opperations function on binary conditions turning "off" a pixel if it has a value of zero, and turning it "on" if the pixel has a value greater than zero.
In your case the bitwise_or "removes" both the black background of the mask and the black points of the noise.
I propose to do it like this:
QUESTION
I did an app designer GUI with two buttons and axes. The first one (LoadimageButton) is loading the pappers image and I can mark points until I press escape. The second button is printing out the point coordinates (PositionButton).
I have noticed that after pressing the two buttons I can move points in the axes and change their positions or delete them. The issue is that when I press the delete (in the context menu) I get this error after pressing the PositionButton:
...ANSWER
Answered 2022-Jan-07 at 14:08You could add a check within the PositionButtonPushed
function for whether or not each pointhandles
element is valid, report on it if so or remove it if not
Something like
QUESTION
In a previous question I got the answer from Hedgehog! (How to check for new discounts and send to telegram if changes detected?)
But another question is, how can I get only the new (products) items in the output and not all the text what is changed. My feeling is that the output I got is literally anything what is changed on the website and not only the new added discount.
Here is the code, and see the attachment what the output is. Thanks again for all the effort.
...ANSWER
Answered 2021-Dec-13 at 10:14As discussed, your assumptions are going in the right direction, all the changes identified by the difflib
will be displayed.
It may be possible to adjust the content of difflib
but I am sure that difflib
is not absolutely necessary for this task.
First step is to upgrade get_discounts(soup)
to not only check if discount is in range but also get information of the item itself, if you like to display or operate on later:
Community Discussions, Code Snippets contain sources that include Stack Exchange Network
Vulnerabilities
No vulnerabilities reported
Install pepper
Docker: Oxford Nanopore variant calling quick start.
Singularity: Oxford Nanopore variant calling quick start.
Support
Reuse Trending Solutions
Find, review, and download reusable Libraries, Code Snippets, Cloud APIs from over 650 million Knowledge Items
Find more librariesStay Updated
Subscribe to our newsletter for trending solutions and developer bootcamps
Share this Page