pytools | some general useful python tools for genomics | Genomics library

by laserson Python Version: Current License: Apache-2.0

X-Ray Key Features Code Snippets Community Discussions(4)Vulnerabilities Install Support

kandi X-RAY | pytools Summary

pytools is a Python library typically used in Artificial Intelligence, Genomics applications. pytools has no bugs, it has no vulnerabilities, it has a Permissive License and it has low support. However pytools build file is not available. You can download it from GitHub.

some general useful python tools for genomics

Support

Quality

Security

License

Reuse

Support

pytools has a low active ecosystem.

It has 21 star(s) with 5 fork(s). There are 2 watchers for this library.

It had no major release in the last 6 months.

There are 0 open issues and 2 have been closed. On average issues are closed in 0 days. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of pytools is current.

Quality

pytools has no bugs reported.

Security

pytools has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

License

pytools is licensed under the Apache-2.0 License. This license is Permissive.

Permissive licenses have the least restrictions, and you can use them in most projects.

Reuse

pytools releases are not available. You will need to build from source code and install.

pytools has no build file. You will be need to create the build yourself to build the component from source.

Top functions reviewed by kandi - BETA

kandi has reviewed pytools and discovered the below as its top functions. This is intended to give you an instant insight into pytools implemented functionality, and help decide if they suit your requirements.

Print a list of primers
R Return the minimum value for a sequence sequence
Expand a sequence
Recursively expand the nodes of a node
Load a timeseries
Stitch two sequences
Count the number of nucleotide hits in a sequence
Translate an identifier to the cleanup identifier

Get all kandi verified functions for this library.

pytools Key Features

No Key Features are available at this moment for pytools.

pytools Examples and Code Snippets

No Code Snippets are available at this moment for pytools.

Community Discussions

Trending Discussions on pytools

I constantly get ResolvePackageNotFound

Can't install pycuda with pip

pycuda.driver module not found

Reloading local module isn't working

QUESTION

I constantly get ResolvePackageNotFound

Asked 2021-Jan-17 at 05:16

When I type conda env create -f environment.yml

I constantly get

...

ANSWER

Answered 2021-Jan-15 at 14:57

Conda does not work well with large environments in which everything pinned to specific versions (in contrast to other ecosystems in which pinning everything is the standard). The result of conda env export, which is what this probably is, here also includes the build numbers, which are almost always too specific (and often platform-specific) for the purpose of installing the right version of the software. It's great for things like reproducibility of scientific work (specific versions and builds of everything need to be known), but not great for installing software (there is plenty of flexibility in versions that should work with any package).

I'd start by removing the build pins (dropping everything after the second = in each line) so that only the versions are pinned. After that, I'd start removing version pins.

Source https://stackoverflow.com/questions/65735532

QUESTION

Can't install pycuda with pip

Asked 2020-Oct-12 at 08:14

I am trying to install the PyCUDA module to run some python script I downloaded, but trying to install it with pip doesn't work.

I run pip install pycuda on the command line

At first, I get this:

...

ANSWER

Answered 2020-Oct-12 at 08:14

Try the following.

Source https://stackoverflow.com/questions/64286145

QUESTION

pycuda.driver module not found

Asked 2019-Jan-18 at 11:52

I have installed python 3.7.2 along with the following libraries: jupyter, pandas, numpy, pytools and pycuda. I'm working with Visual Studio Code. I'm trying to run the standard pyCuda example:

...

ANSWER

Answered 2019-Jan-17 at 15:36

If your code runs without AttributeErrors then it is likely that Visual Studio is giving false positives. If so, ignore them. This happens because doing static analysis on dynamic code doesn't always do the right thing.

Source https://stackoverflow.com/questions/54239159

QUESTION

Reloading local module isn't working

Asked 2018-Jun-25 at 01:00

Firstly, I know this has been posted on before, but either A) the recommendations don't work or B) the recommendation is to manually delete the module from the namespace and re-import it like normal.

I have the following module structure

...

ANSWER

Answered 2018-Jun-25 at 01:00

Let's name things more generally:

Source https://stackoverflow.com/questions/51014960

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install pytools

You can download it from GitHub.
You can use pytools like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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