TOBIAS | Transcription factor Occupancy prediction By Investigation | Genomics library

by loosolab Python Version: 0.16.1 License: MIT

X-Ray Key Features Code Snippets Community Discussions(10)Vulnerabilities Install Support

kandi X-RAY | TOBIAS Summary

TOBIAS is a Python library typically used in Artificial Intelligence, Genomics applications. TOBIAS has no bugs, it has no vulnerabilities, it has build file available, it has a Permissive License and it has low support. You can install using 'pip install TOBIAS' or download it from GitHub, PyPI.

TOBIAS - Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal.

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Quality

Security

License

Reuse

Support

TOBIAS has a low active ecosystem.

It has 140 star(s) with 30 fork(s). There are 13 watchers for this library.

There were 1 major release(s) in the last 12 months.

There are 13 open issues and 185 have been closed. On average issues are closed in 21 days. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of TOBIAS is 0.16.1

Quality

TOBIAS has 0 bugs and 0 code smells.

Security

TOBIAS has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

TOBIAS code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

TOBIAS is licensed under the MIT License. This license is Permissive.

Permissive licenses have the least restrictions, and you can use them in most projects.

Reuse

TOBIAS releases are available to install and integrate.

Deployable package is available in PyPI.

Build file is available. You can build the component from source.

Installation instructions are not available. Examples and code snippets are available.

TOBIAS saves you 2723 person hours of effort in developing the same functionality from scratch.

It has 5901 lines of code, 207 functions and 34 files.

It has high code complexity. Code complexity directly impacts maintainability of the code.

Top functions reviewed by kandi - BETA

kandi has reviewed TOBIAS and discovered the below as its top functions. This is intended to give you an instant insight into TOBIAS implemented functionality, and help decide if they suit your requirements.

Run bindetect
Join two features
Normalizes an array
Calculate the norm factor of an array
Plot the aggregate function
Add common arguments for plotAggregate
Calculate the font size based on l
Force square aspect ratio
Plot plots
Run scorebigwig
Runtfscan
Argument specific to plotAggregate
Run log2 table
Run subsample
Calculate the score for each region
Estimate bias at each region
Run filter fragments
Create a bigwig writer
Format motifs
Run clustering
Run score analysis
Plot tracks
Plot heatmap
Run atacorrect
Bias correction
Cluster motifs
Generate a network

Get all kandi verified functions for this library.

TOBIAS Key Features

No Key Features are available at this moment for TOBIAS.

TOBIAS Examples and Code Snippets

No Code Snippets are available at this moment for TOBIAS.

Community Discussions

Trending Discussions on TOBIAS

'match each' failed, not a json array: + [type: JSON, value: com.jayway.jsonpath.internal.JsonContext@68c87fc3], path: $

Pass data from one ViewModel to another in SwiftUI?

flutter - Comparing two lists of objects isn't working

WordPress/WooCommerce: Save custom payment post meta

Merge two json files into a single file Python

JSON to Excel without overwriting file

How to add numbers in link (loop)

How do i access and manipulate the api values

Add users in bulk with csv file

Makefile pattern rules with subdirectories

QUESTION

'match each' failed, not a json array: + [type: JSON, value: com.jayway.jsonpath.internal.JsonContext@68c87fc3], path: $

Asked 2021-Jun-11 at 16:03

I am trying to validate the json schema. I get below error when I try to do that

Actual response

{ "page": 2, "per_page": 6, "total": 12, "total_pages": 2, "data": [ { "id": 7, "email": "michael.lawson@reqres.in", "first_name": "Michael", "last_name": "Lawson", "avatar": "https://reqres.in/img/faces/7-image.jpg" }, { "id": 8, "email": "lindsay.ferguson@reqres.in", "first_name": "Lindsay", "last_name": "Ferguson", "avatar": "https://reqres.in/img/faces/8-image.jpg" }, { "id": 9, "email": "tobias.funke@reqres.in", "first_name": "Tobias", "last_name": "Funke", "avatar": "https://reqres.in/img/faces/9-image.jpg" }, { "id": 10, "email": "byron.fields@reqres.in", "first_name": "Byron", "last_name": "Fields", "avatar": "https://reqres.in/img/faces/10-image.jpg" }, { "id": 11, "email": "george.edwards@reqres.in", "first_name": "George", "last_name": "Edwards", "avatar": "https://reqres.in/img/faces/11-image.jpg" }, { "id": 12, "email": "rachel.howell@reqres.in", "first_name": "Rachel", "last_name": "Howell", "avatar": "https://reqres.in/img/faces/12-image.jpg" } ], "support": { "url": "https://reqres.in/#support-heading", "text": "To keep ReqRes free, contributions towards server costs are appreciated!" } }

Feature: Create and Read persons ...

Background: * def personBase = '/api/person/'

Scenario: Sample

...

ANSWER

Answered 2021-Jun-11 at 16:03

match each only works if the right-hand-side is a JSON array - which is clearly not the case here.

Source https://stackoverflow.com/questions/67936737

QUESTION

Pass data from one ViewModel to another in SwiftUI?

Asked 2021-Jun-08 at 10:45

I have a ViewModel VM_App with a list of names, with another View V_NamesList inside V_App that is supposed to display these names. For that, I am passing the list from VM_App to VM_NamesList, but the View gets redrawn while editing the names.

VM_App

...

ANSWER

Answered 2021-Jun-08 at 09:22

On SwiftUI View will track if your ObservableObject will change. So if you don't want to refresh the view once the data changes, just don't track for that names changes.

Source https://stackoverflow.com/questions/67884621

QUESTION

flutter - Comparing two lists of objects isn't working

Asked 2021-Jun-02 at 22:56

I've two lists of objects that i wanna compare, a and b:

...

ANSWER

Answered 2021-May-15 at 18:26

ppp2 does not equal ppp3 because they are two different instances of a class. You could override the '==' operator to check if each field is the same. ie. ppp2.id == ppp3.id.

eg/ (taken from equatable docs but this is vanillar dart)

Source https://stackoverflow.com/questions/67549902

QUESTION

WordPress/WooCommerce: Save custom payment post meta

Asked 2021-Jun-02 at 17:44

I am using a plugin that is creating a custom payment type where the user can fill in a custom payment ID. The thing is, I want that custom payment ID stored in an ACF field as post meta on the WooCommerce order edit page. I have created an ACF field named 'kkpayment' for this task. I figured the rest should be done using update_field($selector, $value, [$post_id]);. I have created a PHP function for this task. However, my code doesn't seem to work. Am I missing something obvious?

My function for updating the ACF field:

...

ANSWER

Answered 2021-Jun-02 at 17:44

Use this code to update acf field on successful transaction.

Source https://stackoverflow.com/questions/67808585

QUESTION

Merge two json files into a single file Python

Asked 2021-May-25 at 14:05

I'm calling a paginated API and storing the data of different pages into separate files. The two files are added below.

file1.json

...

ANSWER

Answered 2021-May-25 at 13:19

You can use extend to extend a list with another list:

Source https://stackoverflow.com/questions/67688621

QUESTION

JSON to Excel without overwriting file

Asked 2021-May-24 at 06:58

I am stuck with an issue and hope that I could search for some help.

I am trying to insert rows of information from several JSON documents. The problem is that every time the program is run, the previous lines are exceeded. It will thus only be a line with only information from a JSON document.

This is my Python code:

...

ANSWER

Answered 2021-May-24 at 06:58

   lst=[] 
   for k in range(1002,1005,1):
        link = baseLink + str(k)
        self.driver.get(link)
    
        res = self.driver.find_element_by_tag_name("pre").text
        lst.append(json.loads(res))
        
    prepared_data=lst
    xd = pd.json_normalize(prepared_data)
    xd.to_excel('lista2.xlsx', index=False)

Source https://stackoverflow.com/questions/67666474

QUESTION

How to add numbers in link (loop)

Asked 2021-May-18 at 14:01

I'm writing a script where I try to scrape data from json files. The website link structure looks like this:

https://go.lime-go.com/395012/Organization/pase1009/

I want the Python script to go through a certain number and try to visit them. For example, right now the link is at pase1009. After the script has visited this link I want it to go to pase1010 and so on.

I'm really new to Python and trying to learn how to use loops, count, etc. but don't get it.

My PY code:

...

ANSWER

Answered 2021-May-18 at 14:01

You can combine several strings to one with the +-operator. So you could save your base link in a variable and add the number afterwards in the loop. Would look something like this:

Source https://stackoverflow.com/questions/67587645

QUESTION

How do i access and manipulate the api values

Asked 2021-Apr-22 at 14:03

I would like some direction on how i can access the data and do some modifications etc. for example accessing and listing only emails, etc please

...

ANSWER

Answered 2021-Apr-22 at 14:03

First, I highly recommend you to install the JSON Viewer extension, which will help you a lot to see what's going on your API.

https://chrome.google.com/webstore/detail/json-viewer/gbmdgpbipfallnflgajpaliibnhdgobh?hl=es

Then, you don't need to create a new list, since the x = test.json() already outputs the same dictionary you brought from the API.

So your first chunk of code should look like this

Source https://stackoverflow.com/questions/67214131

QUESTION

Add users in bulk with csv file

Asked 2021-Mar-19 at 13:36

I am trying to make a script that creates users in bulk from a csv file. I tested the script with 5 users, but get the error message "New-ADUser: A value for the attribute was not in the acceptable range of values." I have been searching everywhere, but can't find the mistake!

...

ANSWER

Answered 2021-Mar-19 at 13:36

The error comes from -Name "$User.GivenName $User.SurName", which should have been -Name "$($User.GivenName) $($User.SurName)".

Example:

Source https://stackoverflow.com/questions/66707601

QUESTION

Makefile pattern rules with subdirectories

Asked 2021-Mar-13 at 19:46

Assume I have some project directory with /src /out and /obj. I am trying to use pattern rules to compile all .c files from /src to /obj. If I dont use pattern rules like this:

...

ANSWER

Answered 2021-Mar-13 at 19:46

Do you have a file src/main.h? If you don't then this pattern rule:

Source https://stackoverflow.com/questions/66617826

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install TOBIAS

You can install using 'pip install TOBIAS' or download it from GitHub, PyPI.
You can use TOBIAS like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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