RagTag | Tools for fast flexible genome assembly scaffolding | Genomics library

 by   malonge Python Version: 2.1.0 License: MIT

kandi X-RAY | RagTag Summary

kandi X-RAY | RagTag Summary

RagTag is a Python library typically used in Healthcare, Pharma, Life Sciences, Artificial Intelligence, Genomics applications. RagTag has no bugs, it has no vulnerabilities, it has build file available, it has a Permissive License and it has low support. You can install using 'pip install RagTag' or download it from GitHub, PyPI.

RagTag is a collection of software tools for scaffolding and improving modern genome assemblies. Tasks include:. RagTag also provides command line utilities for working with common genome assembly file formats.

            kandi-support Support

              RagTag has a low active ecosystem.
              It has 336 star(s) with 35 fork(s). There are 7 watchers for this library.
              It had no major release in the last 12 months.
              There are 55 open issues and 103 have been closed. On average issues are closed in 32 days. There are 2 open pull requests and 0 closed requests.
              It has a neutral sentiment in the developer community.
              The latest version of RagTag is 2.1.0

            kandi-Quality Quality

              RagTag has 0 bugs and 0 code smells.

            kandi-Security Security

              RagTag has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.
              RagTag code analysis shows 0 unresolved vulnerabilities.
              There are 0 security hotspots that need review.

            kandi-License License

              RagTag is licensed under the MIT License. This license is Permissive.
              Permissive licenses have the least restrictions, and you can use them in most projects.

            kandi-Reuse Reuse

              RagTag releases are available to install and integrate.
              Deployable package is available in PyPI.
              Build file is available. You can build the component from source.
              Installation instructions are not available. Examples and code snippets are available.
              RagTag saves you 1029 person hours of effort in developing the same functionality from scratch.
              It has 4520 lines of code, 238 functions and 31 files.
              It has high code complexity. Code complexity directly impacts maintainability of the code.

            Top functions reviewed by kandi - BETA

            kandi has reviewed RagTag and discovered the below as its top functions. This is intended to give you an instant insight into RagTag implemented functionality, and help decide if they suit your requirements.
            • Write alignment files to the agp file
            • Add a line to the AGP object
            • Add a comment
            • Add a gap line
            • Build a scaffold graph
            • Returns True if the query start and end of the query
            • Returns True iff the term start and end distance between the term
            • Writes an AGP solution to the given scaffold
            • Determine the gap size of a list
            • Calculate the basic statistics for a genome
            • Update a gff intervals based on the given transformation
            • Adds an AGP file to the graph
            • Reads a genome alignments file
            • Maximum weight matching
            • Compute the maximum matching matching
            • Calculate the confidence interval for this location
            • Normalize reach link links
            • Reads the AGP file
            • Subtracts the sequences from the GFF intervals
            • Write the agp file
            • Merge all alignments
            • Convert a delta file to a PAF file
            • Writes broken sequences to a file
            • Count links in the alignment file
            • Validate the CTC breakpoint
            • Command line tool
            Get all kandi verified functions for this library.

            RagTag Key Features

            No Key Features are available at this moment for RagTag.

            RagTag Examples and Code Snippets

            No Code Snippets are available at this moment for RagTag.

            Community Discussions


            Not sure why I am getting "Warning: Each child in an array or iterator should have a unique "key" prop."
            Asked 2018-Sep-28 at 22:51

            I am getting this error and I am not sure the other solutions I am finding are applicable. I think this error is occurring because I take the prop and extract the first array from "results" when mapping but I am not sure a better way to achieve this. Please let me know what a better practice for this could be. I am currently trying to test my searchbox but I cannot due to this error.



            Answered 2018-Sep-28 at 22:36

            First of all, it is not an error, it is warning.

            Second, you render Card components in a loop. In this case you should provide the unique key property to each component instance.

            For example:

            Source https://stackoverflow.com/questions/52563397


            how to display my data in my tableView with Alamofire request
            Asked 2018-Sep-19 at 23:49

            I have a JSON table with these data and I would like to get the title + oreview and then display them in my application but I am blocked after this condition and I don't know how to proceed, ideas?. I use Alamofire for my request.

            my tab json :



            Answered 2018-Sep-19 at 22:15

            For example, save the movie data in an array, have the data source return 1 section with array.count elements. The table view will then automatically ask for the elements, which you will give from the array. Have the table view reload the data when you obtain the results from your request.

            Source https://stackoverflow.com/questions/52414739


            Filtering out Movies by Genre- Python Movie Database
            Asked 2018-Aug-28 at 23:43

            I'm trying to use python's inbuilt filter() function to filter out movie titles using specified genres. Any Pointers? Another option is use an empty list and adding the filtered movies to that list but I can't get that to work either.



            Answered 2018-Aug-28 at 23:43

            Your filter function needs to have a function that returns True if an item passes a criterion. Look at the following:

            Source https://stackoverflow.com/questions/52067450


            How to add a div object in jquery .html() function without breaking the entire functionality
            Asked 2017-Oct-01 at 22:35

            I'm not sure how to ask this question, so maybe that is why I can't find an answer to it, as well as being incredibly new to javascript in general, but here goes:

            I'm trying to change the content of my main div using javascript by being able to click on a "link" that changes it. I THOUGHT I found a solution when I looked online with the



            Answered 2017-Oct-01 at 21:53

            Source https://stackoverflow.com/questions/46517236

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network


            No vulnerabilities reported

            Install RagTag

            You can install using 'pip install RagTag' or download it from GitHub, PyPI.
            You can use RagTag like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.


            For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .
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          • PyPI

            pip install RagTag

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          • CLI

            gh repo clone malonge/RagTag

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