fusion-report | parsing outputs from fusion detection tools | Genomics library

by matq007 Python Version: 2.1.4 License: GPL-3.0

X-Ray Key Features Code Snippets Community Discussions(1)Vulnerabilities Install Support

kandi X-RAY | fusion-report Summary

fusion-report is a Python library typically used in Manufacturing, Utilities, Energy, Utilities, Artificial Intelligence, Genomics applications. fusion-report has no bugs, it has no vulnerabilities, it has build file available, it has a Strong Copyleft License and it has low support. You can download it from GitHub.

This python script generates an interactive summary report from fusion detection tools. Fusion-report is part of a bigger project nf-core/rnafusion which is designed to detect and report fusion genes from RNA-seq data.

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Quality

Security

License

Reuse

Support

fusion-report has a low active ecosystem.

It has 18 star(s) with 1 fork(s). There are 3 watchers for this library.

It had no major release in the last 12 months.

There are 4 open issues and 26 have been closed. On average issues are closed in 24 days. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of fusion-report is 2.1.4

Quality

fusion-report has 0 bugs and 0 code smells.

Security

fusion-report has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

fusion-report code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

fusion-report is licensed under the GPL-3.0 License. This license is Strong Copyleft.

Strong Copyleft licenses enforce sharing, and you can use them when creating open source projects.

Reuse

fusion-report releases are available to install and integrate.

Build file is available. You can build the component from source.

Installation instructions are not available. Examples and code snippets are available.

It has 43886 lines of code, 134 functions and 98 files.

It has medium code complexity. Code complexity directly impacts maintainability of the code.

Top functions reviewed by kandi - BETA

kandi has reviewed fusion-report and discovered the below as its top functions. This is intended to give you an instant insight into fusion-report implemented functionality, and help decide if they suit your requirements.

Run the application
Exports the results
Generate the MQC file for multiple Fusion genes
Generate fusion list
Parse the given Fusion
Add a tool
Adds a new fusion
Return the factory for the given tool
Download cosmic authentication
Create the database
Download a large file
Setup the database
Load the Fusion configuration
Get the fusion data
Parse a single FASTA line
Parse two sequences
Parse a single line of Fusions
Downloads all the files
Get FusionGDB2
Get a page by filename
Downloads mitelman database
Get Fusion GDB instance
Get all cosmicusions
Retrieve all the fusion information
Retrieve allusions from the database
Return a list of all the fusion names

Get all kandi verified functions for this library.

fusion-report Key Features

No Key Features are available at this moment for fusion-report.

fusion-report Examples and Code Snippets

No Code Snippets are available at this moment for fusion-report.

Community Discussions

Trending Discussions on fusion-report

Remove HTML code block from response using Javascript

QUESTION

Remove HTML code block from response using Javascript

Asked 2021-Feb-23 at 10:34

I want to remove HTML code Block and CSS block from below code and get only XML code from above HTML code block. I want remove this HTML code block and want simple XML format code.

...

ANSWER

Answered 2021-Feb-23 at 06:47

if you konw the root tag of xml, you can use slice function in javascript to get part of the string.

Source https://stackoverflow.com/questions/66328050

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install fusion-report

You can download it from GitHub.
You can use fusion-report like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.