TEtranscripts | including transposable elements in differential enrichment | Genomics library
kandi X-RAY | TEtranscripts Summary
kandi X-RAY | TEtranscripts Summary
TEtranscripts is a Python library typically used in Artificial Intelligence, Genomics applications. TEtranscripts has no vulnerabilities, it has build file available, it has a Strong Copyleft License and it has low support. However TEtranscripts has 3 bugs. You can download it from GitHub.
A package for including transposable elements in differential enrichment analysis of sequencing datasets.
A package for including transposable elements in differential enrichment analysis of sequencing datasets.
Support
Quality
Security
License
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Support
TEtranscripts has a low active ecosystem.
It has 156 star(s) with 23 fork(s). There are 19 watchers for this library.
It had no major release in the last 12 months.
There are 3 open issues and 132 have been closed. On average issues are closed in 175 days. There are no pull requests.
It has a neutral sentiment in the developer community.
The latest version of TEtranscripts is 2.2.3
Quality
TEtranscripts has 3 bugs (2 blocker, 0 critical, 1 major, 0 minor) and 300 code smells.
Security
TEtranscripts has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.
TEtranscripts code analysis shows 0 unresolved vulnerabilities.
There are 8 security hotspots that need review.
License
TEtranscripts is licensed under the GPL-3.0 License. This license is Strong Copyleft.
Strong Copyleft licenses enforce sharing, and you can use them when creating open source projects.
Reuse
TEtranscripts releases are available to install and integrate.
Build file is available. You can build the component from source.
TEtranscripts saves you 1411 person hours of effort in developing the same functionality from scratch.
It has 3155 lines of code, 174 functions and 15 files.
It has high code complexity. Code complexity directly impacts maintainability of the code.
Top functions reviewed by kandi - BETA
kandi has reviewed TEtranscripts and discovered the below as its top functions. This is intended to give you an instant insight into TEtranscripts implemented functionality, and help decide if they suit your requirements.
- Estimate the energy of the TE
- Performs an EM update of multiple reads
- Normalize a list of means
- Compute the total counts for each transcript
- Builds a FWTrackII file
- Compute the pairwise reads from multiple reads
- Parse binary data
- Add a loc
- Builds a FASTTrack V2 V2
- Sort counts by strand
- Return the locations for a given chromosome
- Runs the test function
- Detect the tsize of the file
- Inverse of binomial distribution
- Gathers the number of te_instances per elem
- Calculate normalization for a given method
- Calculate the sum of the mean of the model
- Given an IV sequence return a list of TE annotations
- Build a FWTrackII object
- Parse the source file
- Build a FWTrackII object
- Read features from a GTF file
- Remove duplicates from the locus
- Returns a list of gene annotation for each gene
- Merge plus tags
- Calculates the Poisson CDF
Get all kandi verified functions for this library.
TEtranscripts Key Features
No Key Features are available at this moment for TEtranscripts.
TEtranscripts Examples and Code Snippets
No Code Snippets are available at this moment for TEtranscripts.
Community Discussions
Trending Discussions on TEtranscripts
QUESTION
Multi-stage build just loading last part?
Asked 2020-Jul-27 at 15:42
I'm new with docker and I'm pretty sure this must be a silly mistake (sorry in advance), but I'm trying to combine some images. The first one is to install a software (TEtranscripts), and the second one I just want to have it as it is (cellranger). Here is my Dockerfile:
...ANSWER
Answered 2020-Jul-27 at 15:34Your COPY --from is wrong. You should reference the other build-step instead.
Like that: FROM continuumio/anaconda as firststep and COPY --from=firststep
So your Dockerfile should be:
Community Discussions, Code Snippets contain sources that include Stack Exchange Network
Vulnerabilities
No vulnerabilities reported
Install TEtranscripts
You can download it from GitHub.
You can use TEtranscripts like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.
You can use TEtranscripts like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.
Support
For any new features, suggestions and bugs create an issue on GitHub.
If you have any questions check and ask questions on community page Stack Overflow .
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