TALON | Technology agnostic long read analysis pipeline | Genomics library
kandi X-RAY | TALON Summary
kandi X-RAY | TALON Summary
TALON is a Python package for identifying and quantifying known and novel genes/isoforms in long-read transcriptome data sets. TALON is technology-agnostic in that it works from mapped SAM files, allowing data from different sequencing platforms (i.e. PacBio and Oxford Nanopore) to be analyzed side by side.
Support
Quality
Security
License
Reuse
Top functions reviewed by kandi - BETA
- Perform a parallel alon on the specified interval
- Compute the delta between two positions
- Identify a mono transcript
- Annotate a read
- Read a GTF file from a GTF file
- Parse tab field description
- Set the duplicate index of a DataFrame
- Make a tsv file for reading
- Fetch reads from database
- Create an abundance file
- Verify that the arguments are valid
- Given a SAM file return a list of mapped transcripts
- Splits reads by chromosome
- Get options from the command line
- Filtering transcripts based on the given transcripts
- Check that the inputs are valid
- Read a GTF file
- Fetch abundance from database
- Creates a dataframe from the given db
- Update the database
- Apply filters to the database
- Perform chromosome analysis
- Fetch transcripts from the database
- Identify SAM transcripts
- Writes out the counts file for each of the datasets
- Create a GTF file
TALON Key Features
TALON Examples and Code Snippets
Lines of Code : 34License : Permissive (MIT)
Copyusage: talon [-h] [--f CONFIG_FILE] [--db FILE,] [--build STRING,]
[--threads THREADS] [--cov MIN_COVERAGE]
[--identity MIN_IDENTITY] [--o OUTPREFIX]
optional arguments:
-h, --help show this help message and ex Usage: talon_filter_transcripts [options]
Options:
-h, --help show this help message and exit
--db=FILE TALON database
-a ANNOT, --annot=ANNOT
Which annotation version to use. Will determine which Usage: talon_create_GTF [options]
Options:
-h, --help show this help message and exit
--db=FILE TALON database
-b BUILD, --build=BUILD
Genome build to use. Note: must be in the TALON
Community Discussions
Trending Discussions on TALON
QUESTION
Im a streamer and new to python if anyone can helpo me sort this out ill be super greatful!
...ANSWER
Answered 2020-Aug-26 at 17:23You used the wrong variable:
QUESTION
I want to update my component current state on result by using custom hook but when i update it showing me infinite loop rendering. by using useState() hook. I am new to react hooks.
...ANSWER
Answered 2020-Jul-01 at 21:18Dont setState in the functional component directly. Use onCompleted event:
QUESTION
Quick question here... (By the way, sorry if it has been already answered...) I have a QDialog window (created by a QMainWindow) where I created and used a socket. After some manipulations, the QDialog window closes (by using the QDialog.accept() command) then a new different QDialog window is opened (by the QMainWindow). From that new window, I want to be able to send infos to the server with the already opened socket.
I tried to do that by using these lines of code:
...ANSWER
Answered 2020-Jun-11 at 23:16If you want it to be the same socket then you must share the same socket between the windows.
In my solution I have created a class that handles the socket (in this case I use a QTcpSocket), and if you want to handle a logic in which there is information exchange then you must implement a Command.
QUESTION
I would like to unnest this dataframe.
...ANSWER
Answered 2020-Jun-10 at 22:02We can use reduce with tibble
QUESTION
I have an SQLite database and I am trying to count the occurrence of values in a column but also values in a corresponding row.
My dataset is:
...ANSWER
Answered 2020-May-20 at 01:03You can just sum it because it takes on the values 0 and 1:
QUESTION
I'm completely new to JS and OOPS ( and also not sure about the title ).
In the snippet below, containing Car class as well as its instance. I want to ask if there is a way to update the instance, after changing one of the class parameters. For Example, I want the expected output to the updated value i.e, NewEagl after changing the parameters. The code below returns ("Eagle") both the times.
...ANSWER
Answered 2020-Apr-08 at 20:41When you assign a variable to a property, it just copies the value, it doesn't make a permanent link between the variable and the property. So changing mak doesn't change car1.make.
changemak needs to take the Car as a parameter, and set the property of it.
QUESTION
This question is difficult to word in the title, so an example is required:
I have 3 lists:
...ANSWER
Answered 2019-Nov-21 at 16:12itertools.product is used for this.
QUESTION
(Complete noob here, appologies if I'm unclear!) I have been using Riot Games' API to get information of a players stats on specific characters in a game. I used Json2CSharp in order to create the following data object.
...ANSWER
Answered 2020-Jan-13 at 22:53As described in the comments you need to define a single class that represents all of the Champions. In the example below I have simply renamed the Ziggs class in your question to Champion:
QUESTION
I'm testing some simple HTML/JavaScript code, however, when I open the site, the show/hide scripts only hides the first section, but doesn't do anything to the other sections. I would like it so that for every image clicked, the section corresponding to that image is displayed.
Here is the code:
...ANSWER
Answered 2019-Dec-06 at 18:11Your problem resides on the declaration of document on every function.
Your code is:
QUESTION
I'm using spring boot 1.5.4, i'm following a tutorial where it shows that just by adding h2-console to the localhost:8080/ url you can access the console. But when i do that i have a 404 Whitelabel error. These are the dependencies
...ANSWER
Answered 2017-Jul-19 at 00:03Writing in simple Steps:
In Application.properties file include
Community Discussions, Code Snippets contain sources that include Stack Exchange Network
Vulnerabilities
No vulnerabilities reported
Install TALON
You can use TALON like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.
Support
Reuse Trending Solutions
Find, review, and download reusable Libraries, Code Snippets, Cloud APIs from over 650 million Knowledge Items
Find more librariesStay Updated
Subscribe to our newsletter for trending solutions and developer bootcamps
Share this Page
