cooler | A cool place to store your Hi-C | Genomics library
kandi X-RAY | cooler Summary
kandi X-RAY | cooler Summary
A cool place to store your Hi-C
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Top functions reviewed by kandi - BETA
- Load a histogram
- Append data to a cooler
- Put data into a group
- Set h5 options
- Calculate a balanced balance factor
- Load a dataset
- Open the file
- Open an hdf5 file
- Balance a fan
- Dump a table to a file
- Return a ~astropy matrix
- Load data from disk
- Delete a grp
- Generate bin counts for each chromosome
- Coarsen a generator
- Aggregates pairwise binix files
- Create a tabixAgg aggregator
- Read a table from a group
- Wrapper for the cooler show
- Main application
- Aggregate the chromosome
- Sort chromosomes
- Create a scool object
- Perform zoom level
- Compute pairwise pairs
- Sanitize chromosome records
cooler Key Features
cooler Examples and Code Snippets
Community Discussions
Trending Discussions on cooler
QUESTION
I'm using Spacy and I am looking for a program that counts the frequencies of each word in a text, and output each word with its count and sentence numbers where it appears. Sample input
...ANSWER
Answered 2021-Jun-14 at 22:51I would split the sentence into words and create a dictionary with each key being a word in the text, like so:
QUESTION
I am writing an NPM package that sets environment variables using process.env. Here is the code from the NPM package:
...ANSWER
Answered 2021-May-10 at 20:06Looks like your function is async and your module exports the function so I would advice you to import the file once in the file when your start your app, and call it and wait for its execution and only then start the rest of your app, otherwise there is no warranty because the code is async.
QUESTION
Currently I have a website where the content is all on a single page.
The Menu items, when you click them, jump to the relevant part of the page.
But the jump effect is still jarring and doesn't give a sleek feeling. I think fading in and out would be a cooler effect.
Is it possible to make the Jump action simulate a FadeIn/FadeOut effect?
I just have simple Jump HTML code like this:
...ANSWER
Answered 2021-May-06 at 03:57Switch the href
with a data attribute, in our case, data-href
.
Using JavaScript, detect when the user clicks the link. When detected, fade out the document and set a timeout to fade back in in 500 milliseconds. After fading in, select the element defined in the data-href
attribute and use .scrollIntoView()
QUESTION
I was wondering how I can convert an image in pygame into a number. I'm making a chess game in python. I have everything made. I first made the chessboard out of string:
...ANSWER
Answered 2021-Apr-24 at 06:58An easy way is to use numpy.unique
with the return_inverse
option:
Find the unique elements of an array.
return_inverse
bool, optional: If True, also return the indices of the unique array
Example:
QUESTION
Suppose my code possesses the knowledge about the metadata of a nonexistent class library "mytest.dll", such as the types in this library, the functions of the types, the parameters and return types of the functions, etc.
How does my code manufacture this DLL using techniques such as reflection?
I know my code can generate the "mytest.cs" text file, then execute the compiler to produce the DLL, then delete the "mytest.cs" file. Just want to know if there are "more advanced" or "cooler" ways to do it.
Thanks.
...ANSWER
Answered 2021-Mar-21 at 22:35There are 4 main steps in the process to compile and execute dynamic .net scripts from your application, even really complex scenarios can be simplified in this way:
- Generate the code
- Compile the script
- Load the assembly
- Execute the code
Lets generate a simple Hello Generated C# World App right now!:
Create a method that will generate an assembly that has 1 class called
HelloWorldApp
, this class has 1 method calledGenerateMessage
it will have X input parameters that will be integers, it will return a CSV string of the arguments that were passed in to it.
This solution requires the following package to be installed:
QUESTION
By "selection" commands, I mean commands that do filtering such as grep
, find
, etc.
There are at least a few different IBM mainframe environments that support pipeline processing (CMS Pipelines, for example). It's not a shell construct like it is in Bash, but usually a dedicated PIPE
command that has its own built-in subcommands (stages) that perform the filtering and data processing.
One of the cooler features, in my opinion, is that "selection stages" that perform some kind of filtering usually support multiple output streams. Those data lines that meet the selection criteria are passed to the primary output stream, and if specified, those that do not are passed to a secondary output stream, where they can undergo an entirely different processing sequence.
Taking the example from the Wikipedia page linked above, which might appear in a REXX program:
...ANSWER
Answered 2021-Mar-28 at 02:15You can easily do both transformations in a single command with GNU sed
's negative match operator:
QUESTION
I have a React Component that takes an array and iterates over each node, styling and rendering HTML elements based on the types found within the array.
I have everything running properly and now I'm trying to write a test using Jest to check that:
- The component doesn't render anything when it receives an empty array
- The component renders the appropriate HTML elements based on type when it receives a populated array
I'm relatively new to Jest and testing and I'm not sure how to write the tests to check that the appropriate elements have rendered. Also my null check test keeps failing with the following error message:
...ANSWER
Answered 2021-Mar-04 at 23:58When you return null
from component, React.createElement
still creates an element. And there is no way to actually tell if it will render nothing without inspecting resulted markup.
For example this code will give you proper react element in console, not null
:
QUESTION
I am using a pod called iOSDropDown to display a dropdown selection menu for a textfield. I am getting a list of data from php to populate that selection menu that Im storing in a variable.
The PHP data passed stored in a swift variable looks like this when printed -> "option01","option02","option03"... and so on. This is dynamic data that will change that is why I am retrieving from PHP/MYSQL Database instead of just manually typing in the options in the Swift array.
Below is my code. What I am trying to do is use the "dropdownData" variable that holds the options for the array. Each option should be in its own row and separately selectable. What I am getting is one option, one string of coding with all my options as shown in the picture below.How would I use the dropdownData variable to display options instead of one string, one option?
dropdownData = "option01","option02","option03"... etc. ALL OPTIONS STORED IN THIS ONE ARRAY
...ANSWER
Answered 2021-Feb-24 at 08:28Seems like dumpsArray[indexPath.row] as AnyObject).value(forKey: "dropdownData")
returns a String where names are comma separated,
so
QUESTION
I'm making an extremely crude command based text editor in C++. It works just fine in outputting a .txt's contents. But when writing it gets more complicated. It encounters no problems when writing a single word to a .txt but has this problem when writing input with one or more spaces. Firstly my code looks like this.
...ANSWER
Answered 2021-Jan-01 at 16:25Two things,
- you should change your variable name from filename to something else cause it is hard to interpret what you mean with that.
- The issue you are having is that cin ignores spaces. a better approach would be to use std::getline(std::cin, filewrite); This will read till a null terminated \0 or a new line \n. To get this to read multiple lines put it in a while loop. Another thing to watch out for with this is any extraneous new line characters. To avoid this add a dummy variable string and getline for that string to ensure it is going to read properly.
NOTE: With std::cin, before the read in another option is to put std::cin >> std::noskipws >> varname, but this can sometimes have undefined behaviour
QUESTION
Let's say you have two angles, and you label them 0 and 1. Then you have another angle x. You also know if you'll be going Clockwise or Counter Clockwise to get from angle 0 to angle 1. How do you calculate a number that can describe that third angle?
Examples:
Angle at 0 Angle at 1 Rotation Direction Target Angle Mapped number (x) 0° 90° CCW 60° 2/3 90° 0° CW 60° 1/3 0° 180° CW 90° 1.5 0° 180° CCW 90° 0.5Problems I'm having:
- When x can't be supported within 0 and 1 (I am fine with it just telling me it couldn't do it, but having the number would be cooler).
- When switching from Counter-Clock-Wise (CCW) to CW.
ANSWER
Answered 2020-Dec-25 at 04:16Check the next approach:
Community Discussions, Code Snippets contain sources that include Stack Exchange Network
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Install cooler
Python 2.7/3.4+
libhdf5 and Python packages numpy, scipy, pandas, h5py. We highly recommend using the conda package manager to install scientific packages like these. To get it, you can either install the full Anaconda Python distribution or just the standalone conda package manager.
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