dbg | Naive de Bruijn graph implementation in python | Genomics library
kandi X-RAY | dbg Summary
kandi X-RAY | dbg Summary
Naive de Bruijn graph implementation in python. This is the supporting code for the blog post [A sample fastq file is provided and the code should be run with. where 31 is the k-mer size and read_1.fq … the input FASTQ files. The output is a [GFA file] Any GFA file can be converted into a dot file using. which will read the file (or stdin if no file is given) and produce a dot file.
Support
Quality
Security
License
Reuse
Top functions reviewed by kandi - BETA
- Return all the contigs in a sequence
- Get contig forward contigs
- Get the contig of a contig
- Generate FW
- Calculate the BWT
- Convert contigs to string
- Return the inverse of the DNA sequence
- Parse a GFA file
- Build a dictionary of kers from a fastq file
- Yield kers in a sequence
- Return a dot representation of a GFA
- Prints the GFA
dbg Key Features
dbg Examples and Code Snippets
Community Discussions
Trending Discussions on dbg
QUESTION
I am using Masstransit with Azure service .net5.
I have two applications:
Web Api. Startup:
...ANSWER
Answered 2021-Jun-13 at 02:41The Web API project should not have a receive endpoint – it has no consumers configured. So every message will be skipped by that receive endpoint. You only configure receive endpoints when you have consumers.
And you only need to call ConfigureEndpoints when you've added consumers.
QUESTION
I'm stuck on a problem with writing a parser in Haskell that I hope someone can help out with!
It is a bit more complicated than my usual parser because there are two layers of parsing. First a language definition is parsed into an AST, then that AST is transformed into another parser that parses the actual language.
I have made pretty good progress so far but I'm stuck on implementing recursion in the language definition. As the language definition is transformed from AST into a parser in a recursive function, I can't work out how it can call itself if it doesn't exist yet.
I'm finding it a bit hard to explain my problem, so maybe an example will help.
The language definition might define that a language consists of three keywords in sequence and then optional recursion in brackets.
...ANSWER
Answered 2021-Jun-10 at 18:53I believe you can use laziness here. Pass the final parser as a parameter to transformSyntaxExprToParser, and when you see a Recurse, return that parser.
QUESTION
Are Serilog enrichers - and LogEvent in particular - expected to be aware of properties pushed onto LogContext?
I have a property which is pushed onto the Serilog context:
...ANSWER
Answered 2021-Jun-10 at 05:33The problem was caused by my custom enricher being registered before Enrich.FromLogContext(); e.g.:
QUESTION
I am trying to perform some analysis on llvm IR. For this I try to get the result of the MemorySSAAnalysis pass in each function of a IR module.
However when analyzing the second function, a crash occurs:
...ANSWER
Answered 2021-May-31 at 12:37It seems it was not an issue with the code but with the input data which had debug info (see EDIT2 in the question)
QUESTION
Trying to install erdpy fails with the following error:
ANSWER
Answered 2021-May-24 at 22:46The root cause of the issue is highlighted clearly in the output of the fix-broken command:
QUESTION
I have a call instruction 'call void @calculate_output(i32 %14), !dbg !141' in llvm. I want to retrieve the value object %14 from this. Whenever, I am trying, I am getting the formal parameters for this instead of the actual parameter.
...ANSWER
Answered 2021-May-24 at 07:04If you are getting formal parameters, it means you are working with Function*, not CallInst*. Did you call call->getFunction()?
What you need is just call->getArgOperand(0), see https://llvm.org/doxygen/classllvm_1_1CallBase.html#ab2caa29167597390ab2fc3cf30d70389
QUESTION
We upgraded our GW system to 7.52 SP 7 and also migrated the systems from on-prem to Azure. ECC 7 system is on-prem. After the upgrade and migration was done, the Standard Fiori app 'My Benefits' tile is opening but only the standard portion is working and the extended parts are throwing errors. Here are the errors:
Errors in Console (Browser debugger)
XMLTemplateProcessor-dbg.js:98 Uncaught Error: found in negative cache: 'sap/m/columns.js' from ./resources/sap/m/columns.js: failed to load 'sap/m/columns.js' from ./resources/sap/m/columns.js: 404 - at makeNestedError (https://host:port/sap/bc/ui5_ui5/sap/zmybenefitsext/resources/sap-ui-core.js:92:37)
XHRInterceptor-dbg.js:58 GET https://host:port/sap/bc/ui5_ui5/sap/zmybenefitsext/resources/sap/m/columns.js 404
XMLTemplateProcessor-dbg.js:98 Uncaught Error: failed to load 'sap/m/columns.js' from ./resources/sap/m/columns.js: 404 - Not Found
Error in the Network tab (Browser debugger)
404(Not Found) for https://host:port/sap/bc/ui5_ui5/sap/zmybenefitsext/resources/sap/m/columns.js
I couldn't find any errors in the front-end or the back-end, I cleaned up the caches on both front-end and back-end and also re-indexed the app on the gateway. I also reactivated the ICF nodes.
Here's the index.html
...ANSWER
Answered 2021-May-21 at 16:24I found the issue. The version of the standard Fiori app is using SAPUI5 1.28.5 where columns aggregation is still part of sap.m.List but deprecated. Also, the GW before the upgrade had the SAPUI5 version of 1.52 which still had columns listed as aggregation of List. That's why the app was working before but the upgraded GW SAPUI5 version is 1.71.24 where columns aggregation doesn't exist, hence the NOT FOUND error.
Because the XML is part of the standard code, I won't be able to modify the XML to replace columns with Table.
We had created a ticket with SAP and they said they will have to fix it for us.
QUESTION
I couldn't see anything to say this is normal behaviour, so excuse me if I am blind lol. I have seen something a bit odd when using MassTransit with request-response.
So I have multiple consumers on a service that listens for different requests to do simple tasks, like grab data from a database.
To test each consumer, I created a console app that executes a request for each consumer and checks the response.
What I am noticing is that the first request-response works fine, but when the code runs the next checks the response is received but the message is then moved to the skipped queue and deleted.
Here is the masstransit log for the 2nd request.
Send
[2021-05-14 10:27:11.812 DBG] (MassTransit.)-SEND rabbitmq://192.168.0.25/Ksrs.Requests:ConceptByConceptNoRequest d9360000-cf5b-480f-418f-08d916ba7421 Ksrs.Requests.ConceptByConceptNoRequest
Receive
[2021-05-14 10:28:00.203 DBG] (MassTransit.ReceiveTransport.)-RECEIVE rabbitmq://192.168.0.25/DESKTOP99KLG9M_Tests_bus_5r5yyygxmpry6jgtbdctpqurrb?temporary=true d9360000-cf5b-480f-2626-08d916ba7429 Ksrs.Response.ConceptResponse MassTransit.MessageHandler(00:00:00.0004546)
Skip?
[2021-05-14 10:28:41.361 DBG] (MassTransit.ReceiveTransport.)-SKIP rabbitmq://192.168.0.25/DESKTOP99KLG9M_Tests_bus_5r5yyygxmpry6jgtbdctpqurrb?temporary=true d9360000-cf5b-480f-ce25-08d916ba75f3
Don't understand the skip when I still get the response, the response is as expected and the code can move on.
This is the client request and response code, which is pretty much the same for all my checks. The only difference being the request-response types.
...ANSWER
Answered 2021-May-14 at 14:54MassTransit supports polymorphic message routing. So in the case above, if the message type consumed by Consumer 1 is implemented by the request produced for Consumer 2 or Consumer 3, Consumer 1 will receive a copy of that message – to which it will also respond.
When publishing requests (which is the default if a specific destination address it not specified), it's important to make sure that there is only one consumer for that message type configured.
Polymorphic messaging is great for events, since it is easy to siphon off the interesting event properties with a single consumer and multiple event types. But it is best avoided with commands/requests, based upon what you've seen above. Or at least in the case above, when publishing requests/commands, having a consumer that consumes a super type of the message shouldn't respond, but perhaps only track/log/audit the command/request.
QUESTION
I was answering someone else's question about trying to name the type of, and pass around, a generic function, and I tried writing this code which seems like it's in the spirit of Rust's types and traits:
...ANSWER
Answered 2021-May-10 at 01:44The issue here is that the types are indeed incompatible. You are passing a single function to use_twice and that function needs to have a well-defined type, so there is no way that it can handle
QUESTION
Given some arbitrary float value, what's an idiomatic way of limiting that value to a min/max range? I.e. if you provide a value under the minimum, the minimum range value is returned, and if you provide a value over the maximum, the maximum range value is returned. Otherwise the original float value is returned.
I thought this approach would work, but it's not giving me the correct values:
...ANSWER
Answered 2021-May-10 at 02:56You're almost correct, but it's actually the opposite:
Community Discussions, Code Snippets contain sources that include Stack Exchange Network
Vulnerabilities
No vulnerabilities reported
Install dbg
You can use dbg like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.
Support
Reuse Trending Solutions
Find, review, and download reusable Libraries, Code Snippets, Cloud APIs from over 650 million Knowledge Items
Find more librariesStay Updated
Subscribe to our newsletter for trending solutions and developer bootcamps
Share this Page
