pymzML | pymzML - an interface between Python and mzML Mass | Genomics library

by pymzml Python Version: v2.5.2 License: MIT

X-Ray Key Features Code Snippets Community Discussions(1)Vulnerabilities Install Support

kandi X-RAY | pymzML Summary

pymzML is a Python library typically used in Artificial Intelligence, Genomics applications. pymzML has no bugs, it has no vulnerabilities, it has build file available, it has a Permissive License and it has low support. You can download it from GitHub.

pymzML - an interface between Python and mzML Mass spectrometry Files

Support

Quality

Security

License

Reuse

Support

pymzML has a low active ecosystem.

It has 139 star(s) with 89 fork(s). There are 9 watchers for this library.

It had no major release in the last 12 months.

There are 13 open issues and 90 have been closed. On average issues are closed in 21 days. There are 7 open pull requests and 0 closed requests.

It has a neutral sentiment in the developer community.

The latest version of pymzML is v2.5.2

Quality

pymzML has 0 bugs and 0 code smells.

Security

pymzML has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

pymzML code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

pymzML is licensed under the MIT License. This license is Permissive.

Permissive licenses have the least restrictions, and you can use them in most projects.

Reuse

pymzML releases are available to install and integrate.

Build file is available. You can build the component from source.

pymzML saves you 3007 person hours of effort in developing the same functionality from scratch.

It has 6566 lines of code, 409 functions and 84 files.

It has high code complexity. Code complexity directly impacts maintainability of the code.

Top functions reviewed by kandi - BETA

kandi has reviewed pymzML and discovered the below as its top functions. This is intended to give you an instant insight into pymzML implemented functionality, and help decide if they suit your requirements.

Index a gzml file
Writes the generation header
Add data to the index
Write data to the file
Build the index
Build index from scratch area and chromatograms
Seek to the given position
Add data to the plot
Add a new plot
Return a dictionary mapping mz to the transformed mz
Index text by chapter
Checks if the given mz2find file has peak
Return the highest n peak n peaks
Creates a new plot
Returns the set of mz mz
Create a zipped mzml
Return the scan time in minutes
Identifier ID
Get the extreme values for a given key
Try to download an example file
Compute the similarity between two spectrum
Index a spectrum file
Save the plot
Parse OBO
Read the extions from the file
List of selected precursors

Get all kandi verified functions for this library.

pymzML Key Features

No Key Features are available at this moment for pymzML.

pymzML Examples and Code Snippets

No Code Snippets are available at this moment for pymzML.

Community Discussions

Trending Discussions on pymzML

pymzml install error in Anaconda Spyder

QUESTION

pymzml install error in Anaconda Spyder

Asked 2019-Jun-19 at 11:12

I use Anaconda Spyder. Python 3.6 version.

OS is Windows 7 64bit

I wrote in IPython console.

...

ANSWER

Answered 2019-Jun-19 at 11:12

(Spyder maintainer here) There are two important things to note about your question:

Your command is failing because you don't have the Microsoft Visual Studio 2013 compiler installed in your system. Without this compiler, it won't be possible to install this package.
Our IPython console is meant to run Python code, or very simple external commands with the !foo syntax. For more complex tasks (like installing packages), you need to use a real terminal (i.e. cmd.exe in your case).

Source https://stackoverflow.com/questions/47426756

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install pymzML

You can download it from GitHub.
You can use pymzML like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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