qiita | Qiita - A multi-omics databasing effort | Genomics library

 by   qiita-spots Python Version: 2023.05 License: BSD-3-Clause

kandi X-RAY | qiita Summary

kandi X-RAY | qiita Summary

qiita is a Python library typically used in Artificial Intelligence, Genomics applications. qiita has no bugs, it has no vulnerabilities, it has build file available, it has a Permissive License and it has low support. You can download it from GitHub.

Qiita - A multi-omics databasing effort
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              qiita has a low active ecosystem.
              It has 111 star(s) with 78 fork(s). There are 21 watchers for this library.
              OutlinedDot
              It had no major release in the last 12 months.
              There are 123 open issues and 1300 have been closed. On average issues are closed in 305 days. There are 2 open pull requests and 0 closed requests.
              It has a neutral sentiment in the developer community.
              The latest version of qiita is 2023.05

            kandi-Quality Quality

              qiita has no bugs reported.

            kandi-Security Security

              qiita has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

            kandi-License License

              qiita is licensed under the BSD-3-Clause License. This license is Permissive.
              Permissive licenses have the least restrictions, and you can use them in most projects.

            kandi-Reuse Reuse

              qiita releases are available to install and integrate.
              Build file is available. You can build the component from source.

            Top functions reviewed by kandi - BETA

            kandi has reviewed qiita and discovered the below as its top functions. This is intended to give you an instant insight into qiita implemented functionality, and help decide if they suit your requirements.
            • Creates a new artifact
            • Set the visibility of this artifact
            • Adds an artifact to the database
            • Dump the values as a string
            • Create a new command
            • Extend samples from a metadata template
            • Checks the MD5 template for validity
            • Copy an artifact from an artifact
            • Add new people to the database
            • Download data
            • Create a study
            • Creates a new BIOM artifact for the given analysis
            • Create a workflow from a default workflow
            • Insert filepaths into database
            • Handle OAuth request
            • Create new user
            • Handles GET requests
            • Create a plugin from a config file
            • Create a new software
            • Load configuration from command
            • Create a new analysis
            • Transfer a job to the analysis job
            • Submits the job
            • Update redis stats
            • Create a new environment
            • Purge filepaths from qiita
            Get all kandi verified functions for this library.

            qiita Key Features

            No Key Features are available at this moment for qiita.

            qiita Examples and Code Snippets

            No Code Snippets are available at this moment for qiita.

            Community Discussions

            QUESTION

            I'm trying to receive indicate via BLE connection, but I can't receive any data
            Asked 2021-Apr-17 at 12:47

            I am creating an app for BLE connection for iOS. I can connect to the peripheral from central (iPhone6: iOS12.9) and send commands with I am able to send commands with writevalue.

            https://developer.apple.com/documentation/corebluetooth/cbperipheral/1518949-setnotifyvalue

            In the above setNotifyValue, there is a description that seems to be accepted by indicate. The following methods of didUpdateValueFor do not return.

            ...

            ANSWER

            Answered 2021-Apr-17 at 12:47

            I have example iOS projects (Central & Peripheral) which send/receive indications: https://github.com/alexanderlavrushko/BLEProof-collection

            setNotifyValue here is called similarly as you do, it should be fine.

            I suggest to check the way how the characteristic is created and updated on the Peripheral side, iOS example link.

            Also there is a great iOS application LightBlue which can simulate a BLE device, see this guide:

            • Central - the topic "Subscribing to Characteristics" might be useful
            • Peripheral - "Adding a New Virtual Peripheral", but use Blank device and configure services/characteristics you need

            Source https://stackoverflow.com/questions/67066903

            QUESTION

            Principal component analysis using R. Automatic and manual results do not match
            Asked 2020-Nov-17 at 00:12

            Two different methods of the principal component analysis were conducted to analyze the following data (ch082.dat) using the Box1's R-code, below.
            https://drive.google.com/file/d/1xykl6ln-bUnXIs-jIA3n5S3XgHjQbkWB/view?usp=sharing

            The first method uses the rotation matrix (See 'ans_mat' under the '#rotated data' of the Box1's code) and, the second method uses the 'pcomp' function (See 'rpca' under the '#rotated data' of the Box1's code).

            However, there is a subtle discrepancy in the answer between the method using the rotation matrix and the method using the 'pcomp' function. make it match

            My Question

            What should I do so that the result of the rotation matrix -based method matches the result of the'pcomp' function?

            As far as I've tried with various data, including other data, the actual discrepancies seem to be limited to scale shifts and mirroring transformations.

            • The results of the rotation matrix -based method is shown in left panel.
            • The results of the pcomp function -based method is shown in right panel.

            Mirror inversion can be seen in "ch082.dat" data.(See Fig.1); It seems that, in some j, the sign of the "jth eigenvector of the correlation matrix" and the sign of the "jth column of the output value of the prcomp function" may be reversed. If there is a degree of overlap in the eigenvalues, it is possible that the difference may be more complex than mirror inversion.
            Fig.1

            There is a scale shift for the Box2's data (See See Fig.2), despite the centralization and normalization to the data.
            Fig.2

            Box.1

            ...

            ANSWER

            Answered 2020-Nov-16 at 16:00

            The two sets of results agree. First we can simplify your code a bit. You don't need your function or the for loop:

            Source https://stackoverflow.com/questions/64848347

            QUESTION

            In Xamarin Forms how can I set the font of a label to Medium (System font)
            Asked 2020-Jul-07 at 08:37

            I would like to use SF Pro (iOS) and Roboto (Android) which are the system fonts. Both have medium but I cannot see any way to set these for a label.

            I think I might need a Label custom renderer and would appreciate any advice / suggestions.

            Here are some references:

            https://qiita.com/aqubi/items/3a1e668f4f78d4ad0db7

            https://forums.xamarin.com/discussion/97446/set-font-weight-on-label

            https://github.com/xamarin/Xamarin.Forms/issues/8035

            ...

            ANSWER

            Answered 2020-Jul-06 at 13:47

            Let's start with Android - you can't set Roboto font to semi-bold, since the font doesn't support this weight. Link for reference - Roboto - Google Fonts.

            For iOS, San Francisco supports this font weight. Since you are using the built-in system fonts, simply setting the value to .SFUIText-Semibold should do the trick.

            UPDATE

            Due to the updated nature of the question, we can have 2 approaches here for iOS. The warning message, that you are getting, says it all:

            CoreText note: Client requested name ".SFUIText-Medium", it will get TimesNewRomanPSMT rather than the intended font. All system UI font access should be through proper APIs such as CTFontCreateUIFontForLanguage() or +[UIFont systemFontOfSize:].

            This means that in our render, we can set the font like this:

            Source https://stackoverflow.com/questions/62707415

            QUESTION

            Adding entry to route table with CDK (typescript) when its private subnet already exists
            Asked 2020-Jul-01 at 10:50

            Is it possible to add an entry to an imported private subnet's route table with CDK in typescript? I'm importing the VPC with:

            ...

            ANSWER

            Answered 2020-Jul-01 at 10:50

            I actually got stuck in a similar situation today, which I was able to solve by instantiating new CloudFormation Route resources:

            Source https://stackoverflow.com/questions/62525195

            QUESTION

            How to get in script tag of vue file of / pages / when using Nuxt.js and nuxt-i18n
            Asked 2020-May-19 at 13:11

            https://qiita.com/munieru_jp/items/d7e9f98b5ab5960e7a93

            If you do as above, you can get the contents of {{$ t ('HELLO_WORLD')}} in the tag. How can I get {{$ t ('HELLO_WORLD')}} in the

            ...

            ANSWER

            Answered 2020-May-19 at 06:12

            Use the head method to set the HTML Head tags for the current page.

            https://nuxtjs.org/api/pages-head/

            Source https://stackoverflow.com/questions/61881053

            QUESTION

            DuplicateMappingException Table [] contains physical column name [] referred to by multiple logical column names: [_id], [Id]
            Asked 2020-Apr-30 at 12:29

            I am rewriting a project and I have a build issue.

            ...

            ANSWER

            Answered 2020-Apr-30 at 12:29

            The solution

            The issue was on the access strategy field vs property access.

            In the previous project, everything was with property-based access, but after I have added lombok the class Language was field-based access.

            The class LanguagePK was

            Source https://stackoverflow.com/questions/61510176

            QUESTION

            VPC_CLIENT_ERROR: Unexpected EC2 error: InvalidGroup.NotFound
            Asked 2020-Apr-28 at 13:21

            I encountered this error today on our AWS pipeline, in the CodeBuild Step:

            ...

            ANSWER

            Answered 2020-Apr-27 at 16:03

            I was eventually told our security team had removed security groups by accident. After they fixed it the error disappeared. I have no idea what the fix entails, though.

            Source https://stackoverflow.com/questions/61462615

            QUESTION

            AttributeError: The layer "input_4" has multiple inbound nodes, with different output shapes
            Asked 2020-Mar-04 at 14:10

            I am getting below error."AttributeError: The layer "input_4" has multiple inbound nodes, with different output shapes. Hence the notion of output shape is ill-defined for the layer". Use get_output_shape_at(node_index) instead".

            The code works perfectly fine without running on a Docker container. I have two docker containers on both docker containers I have the same version TensorFlow version 2.1.0 and Keras 2.2.4-tf. However, on the previous system, I ran the code on a windows machine TensorFlow version 1.12.0 and 2.1.6-tf Thanks, help is highly appreciated I am running TensorFlow in a docker container using this1 tutorial. Code for Docker file is given below.

            Docker file

            ...

            ANSWER

            Answered 2020-Mar-04 at 14:10

            The issue arises in the below line

            Source https://stackoverflow.com/questions/60513149

            QUESTION

            Cannot setup kerberized kafka broker: Error in authenticating with a Zookeeper Quorum member: the quorum member's saslToken is null
            Asked 2020-Feb-27 at 23:46

            So I have been trying to setup kafka broker and zookeeper on a single node with kerberos enabled.

            Most of it is based on this tutorial : https://qiita.com/visualskyrim/items/8f48ff107232f0befa5a

            System : Ubuntu 18.04 Setup : A zoopeeker instance and a kafka broker process in one EC2 box, A KDC in another EC2 box. Both on the same security group with open ports on UDP 88.

            Here is what I have done so far.

            1. Downloaded the kafka broker from here : https://kafka.apache.org/downloads
            2. Created a KDC and correctly generated keytab (verified via kinit -t). Then defined krb5_config file and host entries to the kdc in /etc/hosts file.
            3. Created two jaas configs

            cat zookeeper_jaas.conf

            ...

            ANSWER

            Answered 2020-Feb-27 at 23:46

            Well turns out kafka implicitly believes zookeeper's principal is

            Source https://stackoverflow.com/questions/60442956

            QUESTION

            How can I split, send and combine UDP?
            Asked 2020-Jan-24 at 08:23

            I want to do udp communication using the following code.

            This code is a sample, and the msg variable in the actual code is longer than 10,000 bytes.

            UDPSend.py

            ...

            ANSWER

            Answered 2020-Jan-24 at 08:23

            You cannot simply split, transmit and concatenate data in UDP since in UDP packets can be lost, duplicated and reordered during transmission. While you might try to add some (complex) reliability layer on top of UDP the question comes why to use UDP in the first place then instead of TCP. I recommend that you rethink if UDP or the current design you use with UDP is really the right choice for your unknown problem, i.e. focus more on the problem and not on your particular idea of a solution. See also XY problem.

            Source https://stackoverflow.com/questions/59887412

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install qiita

            You can download it from GitHub.
            You can use qiita like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.

            Support

            For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .
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            https://github.com/qiita-spots/qiita.git

          • CLI

            gh repo clone qiita-spots/qiita

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            git@github.com:qiita-spots/qiita.git

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