Basecalling-comparison | A comparison of different Oxford Nanopore basecallers

 by   rrwick Python Version: v5.1 License: GPL-3.0

kandi X-RAY | Basecalling-comparison Summary

kandi X-RAY | Basecalling-comparison Summary

Basecalling-comparison is a Python library. Basecalling-comparison has no bugs, it has no vulnerabilities, it has a Strong Copyleft License and it has low support. However Basecalling-comparison build file is not available. You can download it from GitHub.

A comparison of different Oxford Nanopore basecallers

            kandi-support Support

              Basecalling-comparison has a low active ecosystem.
              It has 303 star(s) with 52 fork(s). There are 50 watchers for this library.
              It had no major release in the last 12 months.
              There are 11 open issues and 11 have been closed. On average issues are closed in 18 days. There are 1 open pull requests and 0 closed requests.
              It has a neutral sentiment in the developer community.
              The latest version of Basecalling-comparison is v5.1

            kandi-Quality Quality

              Basecalling-comparison has 0 bugs and 3 code smells.

            kandi-Security Security

              Basecalling-comparison has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.
              Basecalling-comparison code analysis shows 0 unresolved vulnerabilities.
              There are 0 security hotspots that need review.

            kandi-License License

              Basecalling-comparison is licensed under the GPL-3.0 License. This license is Strong Copyleft.
              Strong Copyleft licenses enforce sharing, and you can use them when creating open source projects.

            kandi-Reuse Reuse

              Basecalling-comparison releases are available to install and integrate.
              Basecalling-comparison has no build file. You will be need to create the build yourself to build the component from source.
              Basecalling-comparison saves you 188 person hours of effort in developing the same functionality from scratch.
              It has 464 lines of code, 24 functions and 5 files.
              It has low code complexity. Code complexity directly impacts maintainability of the code.

            Top functions reviewed by kandi - BETA

            kandi has reviewed Basecalling-comparison and discovered the below as its top functions. This is intended to give you an instant insight into Basecalling-comparison implemented functionality, and help decide if they suit your requirements.
            • Get read lengths from a file
            • Get the length of reads from a fasta file
            • Get the FASTA file type
            • Get the length of each sequence in a fastq file
            • Determine error type based on error
            • Calculate the length of insertion homopolymer
            • Returns the length of deletion homopolymer
            • Check if the sequence of CCG motifs in the DCNM motif
            • Load a fastq or FASTA file
            • Loads a fasta file
            • Load a fastq file
            • Find the start position of the signal
            • Calculate the standard deviation of a signal
            • Load a fasta file
            • Determine the compression type for a given file
            • Get the location of the signal
            • Read a PASTA file into a dictionary
            • Expand a cigar string
            • Read a seq summary file
            • Argument parser
            • Load alignments from file
            • Make the output directory
            Get all kandi verified functions for this library.

            Basecalling-comparison Key Features

            No Key Features are available at this moment for Basecalling-comparison.

            Basecalling-comparison Examples and Code Snippets

            No Code Snippets are available at this moment for Basecalling-comparison.

            Community Discussions

            No Community Discussions are available at this moment for Basecalling-comparison.Refer to stack overflow page for discussions.

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network


            No vulnerabilities reported

            Install Basecalling-comparison

            You can download it from GitHub.
            You can use Basecalling-comparison like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.


            For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .
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