Rg | A small python script that calculates the Radius | Genomics library

by sarisabban Python Version: Current License: MIT

X-Ray Key Features Code Snippets Community Discussions(10)Vulnerabilities Install Support

kandi X-RAY | Rg Summary

Rg is a Python library typically used in Artificial Intelligence, Genomics applications. Rg has no bugs, it has no vulnerabilities, it has a Permissive License and it has low support. However Rg build file is not available. You can download it from GitHub.

This is a very small python script with a function that calculates the Radius of Gyration (Rg) of a protein given its .pdb structure file. It is adapted from the PyMol script to become a stand alone function indipendent of PyMol and capable of running on Python 3.

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Quality

Security

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Support

Rg has a low active ecosystem.

It has 6 star(s) with 9 fork(s). There are no watchers for this library.

It had no major release in the last 6 months.

Rg has no issues reported. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of Rg is current.

Quality

Rg has 0 bugs and 0 code smells.

Security

Rg has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

Rg code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

Rg is licensed under the MIT License. This license is Permissive.

Permissive licenses have the least restrictions, and you can use them in most projects.

Reuse

Rg releases are not available. You will need to build from source code and install.

Rg has no build file. You will be need to create the build yourself to build the component from source.

Top functions reviewed by kandi - BETA

kandi has reviewed Rg and discovered the below as its top functions. This is intended to give you an instant insight into Rg implemented functionality, and help decide if they suit your requirements.

Reads rg coordinates from file

Get all kandi verified functions for this library.

Rg Key Features

No Key Features are available at this moment for Rg.

Rg Examples and Code Snippets

No Code Snippets are available at this moment for Rg.

Community Discussions

Trending Discussions on Rg

Return an Array of Only Numbers From a Range With Mixed Datatypes

Join the tables one to many but duplicate the records bigquery

Align points with background png in ggplot2

R: "Scanning" Numbers for Decimal Points

Extract the last path-segments of a URI or path using RegEx

Unable to pass back a value from the RG popup dialog

@EnableAutoConfiguration(exclude =...) on tests failed in Spring Boot 2.6.0

How to get the PR (Pull Request) number

Efficient code for custom color formatting in tkinter python

Split column based on delimiter and considering the content

QUESTION

Return an Array of Only Numbers From a Range With Mixed Datatypes

Asked 2022-Mar-26 at 21:59

Related to the following screenshot, the formula
...

ANSWER

Answered 2022-Mar-24 at 03:54

365

Source https://stackoverflow.com/questions/71596096

QUESTION

Join the tables one to many but duplicate the records bigquery

Asked 2022-Feb-26 at 20:53

i'm working on bigquery. I have two tables: one for sites and one for site logs. I want to make a query that selects all the sites (without duplicating them) and tells me the last status by date. I also want to know what answer team 1 or team 2 gave for each site. I do left join and duplicate everything, I already tried doing subqueries but it gives me an error. how can i solve it?

Table sites

...

ANSWER

Answered 2022-Feb-26 at 20:53

Try below

Source https://stackoverflow.com/questions/71280070

QUESTION

Align points with background png in ggplot2

Asked 2022-Feb-15 at 11:30

I am trying to crease a grid of points corresponding to luminescence values in a 384-well plate experiment. I am drawing the plate as a .png file and overlaying the grid such that each point should sit in one well of the plate. Example code and data provided.

Is it possible to do this with ggplot2?

I am using the following code (example data provided):

...

ANSWER

Answered 2022-Feb-14 at 16:50

By manually adjusting the position of the image with xmin/xmax & ymin/ymax, fixing the pitch of rows and columns with coord_fixed(clip = "off) and expanding the plot.margin in theme I was able to get something that seems like it will work.

Source https://stackoverflow.com/questions/71115145

QUESTION

R: "Scanning" Numbers for Decimal Points

Asked 2022-Feb-05 at 16:37

I am working with the R programming language.

Suppose I have the following data:

...

ANSWER

Answered 2022-Feb-05 at 01:32

From the output it seems you want 2 entries before decimal and 3 entries after decimal point.

You may use sub to extract those values.

Source https://stackoverflow.com/questions/70994525

QUESTION

Extract the last path-segments of a URI or path using RegEx

Asked 2022-Feb-03 at 23:32

I am trying to extract the last section of the following string :

...

ANSWER

Answered 2022-Feb-03 at 22:41

Use

Source https://stackoverflow.com/questions/70979256

QUESTION

Unable to pass back a value from the RG popup dialog

Asked 2022-Jan-25 at 13:37

So I am trying to get a value out of an rgPopupPage which I have set as a property of list.

I am calling the popup page as such.

...

ANSWER

Answered 2022-Jan-22 at 21:28

Ok So I figured it out as such the best approach seems to be.

In my Calling Popup I have this. Ie on my Button close

Source https://stackoverflow.com/questions/70817095

QUESTION

@EnableAutoConfiguration(exclude =...) on tests failed in Spring Boot 2.6.0

Asked 2022-Jan-15 at 03:04

I tried to upgrade my data-mongo example project to Spring Boot 2.6.0. There is a test designed to run against Testcontainers, I also included the embedded mongo dep for other tests, so I have to exclude the AutoConfiguration for embedded mongo to make sure this test working on Docker/testcontainers.

The following configuration worked well with Spring Boot 2.5.6.

...

ANSWER

Answered 2021-Nov-20 at 17:20

As of Spring Boot 2.6, the property spring.mongodb.embedded.version must be set to use the auto-configured embedded MongoDB. It's mentioned in the release notes: https://github.com/spring-projects/spring-boot/wiki/Spring-Boot-2.6-Release-Notes#embedded-mongo

This is also what the error message you posted, advises to do: Set the spring.mongodb.embedd ed.version property or define your own MongodConfig bean to use embedded MongoDB

The annotation @DataMongoTest is meta-annotated with @ImportAutoConfiguration and @AutoConfigureDataMongo, and is designed to trigger auto-configuration of MongoDB unless explicitly disabled as you do in the working configuration examples.

In your first configuration example, the annotation @EnableAutoConfiguration(exclude = EmbeddedMongoAutoConfiguration.class) does not override this effect of @DataMongoTest.

With Spring Boot 2.5.6, the auto-configured MongodConfig bean is most likely also part of the application context but not effectively used. But this depends on the rest of the code and in particular on the MongodbContainerInitializer.

Source https://stackoverflow.com/questions/70047380

QUESTION

How to get the PR (Pull Request) number

Asked 2022-Jan-14 at 18:29

I just started using Pulumi and I checked a lot of docs, a lot of repos and just can't find how can I get the PR (Pull Request) number to be used.

I know that Pulumi generates an Environment variable/output/config named ci.pr.number.

I would like to use that number to create an Azure Resource Group like rg-{appname}-{environment}-{pr number}. For example, rg-myapp-dev-022.

Last attempt was this one:

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ANSWER

Answered 2022-Jan-14 at 18:29

If you want to use the PR number in your Pulumi program at runtime, you'll need to read it from the GitHub Actions runtime environment somehow; Pulumi doesn't write it to your stack configuration. GitHub Actions exposes a Context API that makes this fairly straightforward, assuming you have access to make a small addition to the workflow itself. Here's an example of a PR workflow containing a step that pulls the PR number into an environment variable (PR_NUMBER) and then uses it in a couple of scripts, first Bash, then Node.js:

Source https://stackoverflow.com/questions/70704846

QUESTION

Efficient code for custom color formatting in tkinter python

Asked 2022-Jan-11 at 14:31

[Editing this question completely] Thank you , for those who helped in building the Periodic Table successfully . As I completed it , I tried to link it with another of my project E-Search , which acts like Google and fetches answers , except that it will fetch me the data of the Periodic Table .

But , I got a problem - not with the searching but with the layout . I'm trying to layout the x-scrollbar in my canvas which will display results regarding the search . However , it is not properly done . Can anyone please help ?

Below here is my code :

...

ANSWER

Answered 2021-Dec-29 at 20:33

I rewrote your code with some better ways to create table. My idea was to pick out the buttons that fell onto a range of type and then loop through those buttons and change its color to those type.

Source https://stackoverflow.com/questions/70506629

QUESTION

Split column based on delimiter and considering the content

Asked 2022-Jan-03 at 22:36

I need to split the content of a pandas column that contain some 'structured' data in many other columns based on content.

The strucure is "column_name1"/"value1"/"column_name2"/"value2"/...

For instance, the word "subscriptions" will become the name of column, and the "sub-id", "sub-id2" will be the values.

Transform this:

ResourceID /subscriptions/sub-id/resourceGroups/rg-name/providers/Microsoft.MachineLearningServices/workspaces/work-ml/providers/Microsoft.EventGrid/extensionTopics/default /subscriptions/sub-id2/resourceGroups/rg-name2/providers/Microsoft.Sql/servers/name-sqlserver/databases/name-BD

Into this:

subscriptions resourceGroups providers workspaces servers providers extensionTopics databases sub-id rg-name Microsoft.MachineLearningServices work-ml NaN Microsoft.EventGrid default NaN sub-id2 rg-name2 Microsoft.Sql NaN name-sqlserver NaN NaN name-BD

Any help would be very apreciate.

...

ANSWER

Answered 2022-Jan-03 at 22:26

Each row looks like: /key1/val1/key2/val2/... so split each part, zip keys and values then create a dict. Finally, use pd.DataFrame.from_records to create your expected dataframe:

Source https://stackoverflow.com/questions/70571993

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install Rg

You can download it from GitHub.
You can use Rg like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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