attract | ATTRACT program suite for macromolecular docking | Genomics library

by sjdv1982 Python Version: Current License: Non-SPDX

X-Ray Key Features Code Snippets Community Discussions(10)Vulnerabilities Install Support

kandi X-RAY | attract Summary

attract is a Python library typically used in Artificial Intelligence, Genomics applications. attract has no bugs, it has no vulnerabilities and it has low support. However attract build file is not available and it has a Non-SPDX License. You can download it from GitHub.

ATTRACT program suite for macromolecular docking (protein-protein, protein-nucleic acid, protein-peptide). The git repository contains gpuATTRACT as a submodule: when using git clone, add --recursive. See INSTALLATION.txt for further installation instructions.

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Quality

Security

License

Reuse

Support

attract has a low active ecosystem.

It has 6 star(s) with 9 fork(s). There are 1 watchers for this library.

It had no major release in the last 6 months.

There are 1 open issues and 0 have been closed. On average issues are closed in 224 days. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of attract is current.

Quality

attract has no bugs reported.

Security

attract has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

License

attract has a Non-SPDX License.

Non-SPDX licenses can be open source with a non SPDX compliant license, or non open source licenses, and you need to review them closely before use.

Reuse

attract releases are not available. You will need to build from source code and install.

attract has no build file. You will be need to create the build yourself to build the component from source.

Top functions reviewed by kandi - BETA

kandi has reviewed attract and discovered the below as its top functions. This is intended to give you an instant insight into attract implemented functionality, and help decide if they suit your requirements.

Writes a list of objects .
generate constructor
Return the hydrogens for a given resname
Generate cryo init .
Convert an emodel object to a model .
Sets the value of the model .
Compile a spyder file .
Resolve an elegroup group .
Create a web form .
Reduce a CGI object .

Get all kandi verified functions for this library.

attract Key Features

No Key Features are available at this moment for attract.

attract Examples and Code Snippets

No Code Snippets are available at this moment for attract.

Community Discussions

Trending Discussions on attract

What is the most advantageous thing about VIM

Vertically scrollable code with RStudio and xaringan

Vector attraction when mouse pressed

Particles.js background not adjusting

Remove key from nested/multidimensional array if value is empty ("") or (null)

Easy, simple, attractive way/path/option to signup/register a new user in Joomla 3.9

Pagination link are repetitive in my BeautfiulSoup Python Code

I cannot deserialize JSON object, it returns null

Storing secrets in firebase projects: Firebase config API or Secret Manager API?

Problems when using join and pagination together in Laravel

QUESTION

What is the most advantageous thing about VIM

Asked 2021-Jun-14 at 03:44

I am newbie to Vim world, and I see so many people using VIM, whats the convincing part of it that attracts people? i mean they can already use the GUI based Editors , aren't we moving backwards? . I've read so many blogs, watched videos, still didn't find the perfect sense to use it.

If anyone is experienced can you tell me in simple English what is the purpose of VIM over Other Development environments.

How will it help me in my C++ learning journey? or will it?

I dont think it is good question to ask here, but i am very curious to get some insights.

...

ANSWER

Answered 2021-Jun-14 at 03:44

Vim is the god of editors.

Practical Vim Edit Text at the Speed of Thought.pdf

Source https://stackoverflow.com/questions/67964415

QUESTION

Vertically scrollable code with RStudio and xaringan

Asked 2021-Jun-11 at 20:06

I am currently preparing html slides for an R modelling workshop, for which I use the awesome xaringan package for R. It is based on remark.js. Compared to ioslides and slidy, it does much better suit my expectations. I am absolutely excited! One feature that I missed, are scrollable "long slides". Here I leave of course the "slides" paradigm towards a mix between slides and ordinary web pages, but I find this didactically attractive to explain complex content and code. This style worked well with slidy, and I found also some hints how to enable scrollable code in xaringan.

Here I use the following CSS (found in a related post at SO):

...

ANSWER

Answered 2021-Jun-11 at 20:06

remark.js was not made with scrollable slides in mind, which means that it is not possible to implement scrolling without a major feature addition to remark.js or breaking certain remark.js features.

If you are willing to break some features, the easiest way I can think of to hack in scrollable slides is by altering the y-overflow of the .remark-slide-scaler class. All we have to do is add the following CSS:

Source https://stackoverflow.com/questions/67750561

QUESTION

Vector attraction when mouse pressed

Asked 2021-Jun-08 at 11:29

Currently trying to create attraction effect on 3D cubes using createVector function. The attraction designed to trigger when mouse pressed but currently it's stating the error:

...

ANSWER

Answered 2021-Jun-08 at 11:29

You're using index a for argument of Cubes.attraction which is expecting an object with a pos vector field (a Cubes ?)
You're trying to position your cubes using this.x / this.y, which aren't changed by update. Use the this.pos vector instead
You can optimize by checking for mouse pressed only once, and only then calling attraction on every cube with mouse coordinates as vector argument
In physics, force drives acceleration, not velocity. I changed that but maybe it was deliberate of you.
You should change your class name to Cube rather than Cubes

Source https://stackoverflow.com/questions/67884977

QUESTION

Particles.js background not adjusting

Asked 2021-Jun-07 at 18:10

When I adjust my config for Particles.js, the background color/image do not change from how it comes. I am not sure what I have done wrong. Here is my code:

HTML:

...

ANSWER

Answered 2021-Jun-07 at 18:10

Source https://stackoverflow.com/questions/67876220

QUESTION

Remove key from nested/multidimensional array if value is empty ("") or (null)

Asked 2021-May-26 at 23:21

I am reading about how this is done, but all this nesting has gotten me a bit befuddled...

Here is my current code:

...

ANSWER

Answered 2021-May-26 at 23:21

Rather than cleaning up the array after you define it, just filter in your array definition with array_filter to remove empties. If you want an array definition in JSON with no index numbers then use array_values:

Source https://stackoverflow.com/questions/67694761

QUESTION

Easy, simple, attractive way/path/option to signup/register a new user in Joomla 3.9

Asked 2021-May-13 at 11:26

I'm a volunteer for a not-for-profit project committed to conceiving a "way" to easy (considering the user audience not used to browse websites) and make attractive the registration of a new user on the home page Joomla website 3.9.

After a web search and a look in the Joomla section of the extensions on the related, I've just found that one of the possible options that meet my requirements is a free extension that enables the user to signup with a social account (Twitter, Facebook, etc.): SLogin.

I've found that the category under which I may look for a suitable extension is: Tutorial or website tour. But all of the ones I find on the web are not free.

If I was in the shoes of a user not familiar with registering a new account on a website, maybe I'd expect to find a guided procedure with popup windows or more than one webpage with plenty of information on any single step involved in the user creation.

I wonder if there is a template or extension (free) or any other option (not custom developed) that may do that job; I'm open to any suggestions based on the requirements above.

...

ANSWER

Answered 2021-May-10 at 20:13

Try BreezingForms - https://extensions.joomla.org/extension/breezing-forms/

I think it allows you (even in the free version) to create custom forms, as complex as you need (multi-page, etc.) and then port them into Joomla! user creation.

You're gonna need to hunt around on their forums/support to find out how to do this exactly because it's been a long time since I've used BreezingForms.

This post on their forum has a user asking the same question and I think they answer it conclusively: https://crosstec.org/en/forums/3-breezingforms-for-joomla/123224-how-to-make-login-and-registration-forms-with-breezingforms-pro.html

Good luck and have fun!

Source https://stackoverflow.com/questions/67476661

QUESTION

Pagination link are repetitive in my BeautfiulSoup Python Code

Asked 2021-May-01 at 16:24


from bs4 import BeautifulSoup
import requests
import csv

class Parse():
    
    def __init__(self):
        self.row_list = []
        self.base_url ='https://www.tripadvisor.co.uk'

    def parse(self,url): # correct  
        headers = {'User-Agent': 'Mozilla/5.0 (Windows NT 10.0; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/90.0.4430.93 Safari/537.36 Edg/90.0.818.51'}     
        response = requests.get(url,headers).text
        soup = BeautifulSoup(response,'html.parser')        
        next_link = soup.find('a',class_='_23XJjgWS _1hF7hP_9 _2QvUxWyA')
        next_page = self.base_url+next_link.attrs['href']  
        
        cards = soup.find_all('section',class_='_2TabEHya _3YhIe-Un')
        for card in cards:
            name = card.find('div',class_='_1gpq3zsA _1zP41Z7X').text
            rating = str(card.find('svg',class_='zWXXYhVR'))         
            rating = self.remove(filter_col=rating)
            review_count = card.find('span',class_='DrjyGw-P _26S7gyB4 _14_buatE _1dimhEoy').text
            status = card.find('div',class_='DrjyGw-P _26S7gyB4 _3SccQt-T').text            
            row_list = [name,rating,status,review_count]                 
        return next_page,row_list

    def remove(self,filter_col):
        rating = filter_col.split(' ')[1]
        rating = rating[-3:]
        return rating              
    
    def write_csv(self,row_list):
        with open('top_sites.csv','w') as file:
            csv_writer = csv.writer(file, delimiter=',')
            csv_writer.writerows(row_list)    
    
if __name__=='__main__':
    url = "https://www.tripadvisor.co.uk/Attractions-g294190-Activities-oa30-Myanmar.html"
    parsing = Parse()                  
    next_url,row_list = parsing.parse(url=url)
    print(next_url)
 
PS C:\Users\Caspe\PycharmProjects\Selenium Test> & "c:/Users/Caspe/PycharmProjects/Selenium Test/.venv/Scripts/python.exe" "c:/Users/Caspe/PycharmProjects/Selenium Test/Demo/tripadvisor_topattract.py" 
https://www.tripadvisor.co.uk/Attractions-g294190-Activities-Myanmar.html
PS C:\Users\Caspe\PycharmProjects\Selenium Test>

...

ANSWER

Answered 2021-May-01 at 16:24

To get pagination working, it's necessary to change the -oa- part in URL:

Source https://stackoverflow.com/questions/67348266

QUESTION

I cannot deserialize JSON object, it returns null

Asked 2021-Apr-26 at 19:35

I am cathing one API and I cannot deserialize a JSON property and I do not know where is the problem.

So I have an object from convertJSON2CSharp :

...

ANSWER

Answered 2021-Apr-26 at 19:35

The problem is in the models you defined. Base on the JSON your models will be:

Source https://stackoverflow.com/questions/67251710

QUESTION

Storing secrets in firebase projects: Firebase config API or Secret Manager API?

Asked 2021-Apr-26 at 15:15

To access secrets from cloud functions, Google provides the Secret Manager API:

Secret Manager stores API keys, passwords, certificates, and other sensitive data. It provides convenience while improving security.

On the other hand Firebase suggests storing secrets via its Environment configuration API as explicitly mentioned in its docs and examples:

Often you'll need additional configuration for your functions, such as third-party API keys or tuneable settings. The Firebase SDK for Cloud Functions offers built-in environment configuration to make it easy to store and retrieve this type of data for your project.

Question:

Firebase's configuration API appears to be more simplistic in the way it handles data and is also free of charge, which makes it attractive to be used for Firebase projects instead of the Secret Manager API.

What are the advantages and drawbacks when comparing the two APIs in the context of a firebase project? Most importantly, are there any drawbacks in terms of security when utilizing Firebase's configuration API over the the Secret Manager API?

...

ANSWER

Answered 2021-Apr-26 at 15:15

The major differences aside from what you’ve pointed out is that Secret Manager has features like auditing, fine-gained access controls, versioning, and multi-regional replication.

I'm going to file an internal issue about making a "comparison" page to make this clearer.

Source https://stackoverflow.com/questions/67265208

QUESTION

Problems when using join and pagination together in Laravel

Asked 2021-Apr-26 at 07:51

I have some tables in my database and I'm trying to transact between them. My aim is to show the project name and the employees in that project in the form of cards on my projects page as in the image below. (Other than the method I mentioned, if there are better ways to do this, I ask you to share.)

When trying to do this, the first thing that came to my mind was to use leftJoin. Together with the projects, I thought of pulling the users in that project together and showing them by using foreach nested. If I just want to shoot projects, there will be no problem and the first 4 projects come and everything works fine. But since I needed to attract the users in that project along with my projects, when I used leftJoin, I got an output as you can see below. I had to use pagination as I needed to show 4 projects per page, and when I used pagination, the lines that came in were inconsistent. While waiting for 4 projects and their employees to arrive, the first 4 lines came. (3 employees of 1 project and the first employee of the other project have arrived.)

My code:

...

ANSWER

Answered 2021-Apr-26 at 07:51

You may consider using Eloquent relationship instead of left join. In fact left join wouldn't work that well in your case since you will have to group all users in the same project from the rows afterwards. Example of Eloquent relationship using whereHas and with as follows.

Source https://stackoverflow.com/questions/67259876

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install attract

You can download it from GitHub.
You can use attract like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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