luminate | Denoising longitudinal microbiome data | Genomics library

 by   tyjo Python Version: Current License: No License

kandi X-RAY | luminate Summary

kandi X-RAY | luminate Summary

luminate is a Python library typically used in Artificial Intelligence, Genomics, Deep Learning, Pytorch, Tensorflow applications. luminate has no bugs, it has no vulnerabilities, it has build file available and it has low support. You can download it from GitHub.

LUMINATE (longitudinal microbiome inference and zero detection) includes four programs for inference in longitudinal microbiome datasets:.
Support
    Quality
      Security
        License
          Reuse

            kandi-support Support

              luminate has a low active ecosystem.
              It has 6 star(s) with 2 fork(s). There are 1 watchers for this library.
              OutlinedDot
              It had no major release in the last 6 months.
              There are 1 open issues and 4 have been closed. On average issues are closed in 87 days. There are no pull requests.
              It has a neutral sentiment in the developer community.
              The latest version of luminate is current.

            kandi-Quality Quality

              luminate has no bugs reported.

            kandi-Security Security

              luminate has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

            kandi-License License

              luminate does not have a standard license declared.
              Check the repository for any license declaration and review the terms closely.
              OutlinedDot
              Without a license, all rights are reserved, and you cannot use the library in your applications.

            kandi-Reuse Reuse

              luminate releases are not available. You will need to build from source code and install.
              Build file is available. You can build the component from source.
              Installation instructions, examples and code snippets are available.

            Top functions reviewed by kandi - BETA

            kandi has reviewed luminate and discovered the below as its top functions. This is intended to give you an instant insight into luminate implemented functionality, and help decide if they suit your requirements.
            • Train the model
            • Set the regularizers
            • Get parameters
            • Wrapper around elasticnet
            • Computes the tridiagonal transition matrix
            • Computes the tridiag transformation of b
            • Load observations from an OTA file
            • Formats the observed observations as observed observations
            • Parse event table
            • Print the error and exit
            • Simulate the simulation
            • Simulate counts by sampling
            • Simulate a GLV trajectory
            • Compute the covariance matrix
            • Generate a PDF plot of the given features
            • Plot a bar chart
            • Compute the true zeroes
            • Estimate the Gaussian model parameters
            • Write effects to a csv file
            • Estimate ridge regression
            • Computes the tridiag matrix of the transition matrix
            • Estimate relative abundances of a model
            • Sparsify a sequence of points
            • Write predictions to a table
            • Simulates the simulation
            • Predict x for a set of points
            • Given a set of log - probability distributions choose the binomial
            • Computes the block tridiagonal inv
            Get all kandi verified functions for this library.

            luminate Key Features

            No Key Features are available at this moment for luminate.

            luminate Examples and Code Snippets

            No Code Snippets are available at this moment for luminate.

            Community Discussions

            QUESTION

            Change transparency for non-default color
            Asked 2021-May-19 at 16:38

            I have created my own color using the following command:

            ...

            ANSWER

            Answered 2021-May-19 at 16:38

            Everything within quotes is treated as one object, so you need to include %30 within the quotes.

            Source https://stackoverflow.com/questions/67603912

            QUESTION

            AWK change field separator multiple times
            Asked 2021-Feb-18 at 13:04

            I have the following sample code below; for ease of testing I have combined the text of a few files into one. Usually this script would use the find command to filter through each subdirectory looking for versions.tf and run AWK on each one.

            ...

            ANSWER

            Answered 2021-Feb-18 at 08:19

            Changing FS does not have immediate effect, consider that if file.txt content is

            Source https://stackoverflow.com/questions/66255562

            QUESTION

            How can I specify what I want when there are multiple duplicates in BeautifulSoup4?
            Asked 2020-Feb-25 at 08:47

            So basically, I was using

            ...

            ANSWER

            Answered 2020-Feb-25 at 08:47

            You can locate the with the text you are looking for and go to the parent table from there using find_parent

            Source https://stackoverflow.com/questions/60390434

            QUESTION

            Diffuse lighting for a moving object
            Asked 2020-Feb-10 at 06:29

            When calculating diffuse lighting for a moving object, I have to move the luminous source along with the object itself:

            ...

            ANSWER

            Answered 2020-Feb-07 at 09:25

            I have to move the luminous source along with the object itself

            Why does the light source move with the object?

            If the light is a point light source in the world, and the object moves, then the illumination of the object changes (in the "real" world).

            In your case, the lighting is computed in view space. If the light source is a point in the world, then you have to transform the position by the view matrix (the view matrix transforms from world space to view space). e.g:

            Source https://stackoverflow.com/questions/60109487

            QUESTION

            How to count a cursor iteration in mongodb?
            Asked 2019-Oct-24 at 12:27
            var myCursor = db.bookshop.aggregate([]).pretty();
            
            while (myCursor.hasNext()) {
               var x = myCursor.next();
               if(x.book)
               print(tojson(x));
            };
            
            while (myCursor.hasNext()) {
               var x = myCursor.next();
               if(x.journal)
               print(tojson(x));
            };
            
            while (myCursor.hasNext()) {
               var x = myCursor.next();
               if(x.musicCD)
               print(tojson(x));
            };
            
            while (myCursor.hasNext()) {
               var x = myCursor.next();
               if(x.magazine)
               print(tojson(x));
            };
            
            
            ...

            ANSWER

            Answered 2019-Oct-24 at 12:27

            You could do that with a single iteration on the cursor : If the fields (book, musicCD etc.) are considered for counting, which I understand is what you are looking for.

            Source https://stackoverflow.com/questions/58538198

            QUESTION

            SQLSTATE[42S22]: Column not found: 1054 Unknown column in php
            Asked 2019-Oct-22 at 23:04

            i'm making an app where i want to login and register and also being able to import a csv file into database , the reg and login is working good however i came accross this when i want to import the csv:

            error luminate\Database\QueryException SQLSTATE[42S22]: Column not found: 1054 Unknown column 'classe' in 'where clause' (SQL: select * from accounts where (classe = 7 and nocompte = 7598) limit 1) Account table

            ...

            ANSWER

            Answered 2019-Oct-22 at 23:03

            You are telling it to query the 'accounts' table looking for a field named 'classe':

            Source https://stackoverflow.com/questions/58513325

            QUESTION

            Is there a way to hide a link if the file does not exist on FTP using JavaScript/jQuery?
            Asked 2018-Jun-19 at 17:24

            what I'm hoping to accomplish is if there isn't a file for a particular location then hide the link, if there is, show the link.

            I have this piece of html here:

            ...

            ANSWER

            Answered 2018-Jun-19 at 16:32

            I believe below is a bit slow as it will ajax every single one of your pdfs, but it will do the trick, since you seem to only be able to solve it from the client side and since you only really need fail/error with 404:

            Source https://stackoverflow.com/questions/50932378

            QUESTION

            Neo4j - How to access bolt from a secure connection using Docker image?
            Asked 2017-Aug-21 at 11:39

            New to Docker. So I have managed to deploy the official Neo4j EE Docker image to Google Container Engine, and when running my Angular application from localhost everything is fine (because it's not coming from a secure connection).

            However, when I deploy the app to Firebase, then the app makes all calls to the DB/Docker container from a secure connection, which results in the following error:

            ...

            ANSWER

            Answered 2017-Aug-21 at 11:39

            You should set this parameter in your neo4j.conf

            Source https://stackoverflow.com/questions/45789764

            QUESTION

            How to target a specific element if two blocks of element use the same nested setup?
            Asked 2017-Aug-16 at 11:45

            I wanted to target the second span nested inside a span to overwrite "I agree to the Rules and Regulations" so that I can hyperlink "Rules and Regulations"

            ...

            ANSWER

            Answered 2017-Jul-31 at 15:44

            You could iterate over these spans, and change their content based on their index:

            Source https://stackoverflow.com/questions/45420090

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install luminate

            See ./run-examples.sh to run each program on an example dataset.

            Support

            For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .
            Find more information at:

            Find, review, and download reusable Libraries, Code Snippets, Cloud APIs from over 650 million Knowledge Items

            Find more libraries
            CLONE
          • HTTPS

            https://github.com/tyjo/luminate.git

          • CLI

            gh repo clone tyjo/luminate

          • sshUrl

            git@github.com:tyjo/luminate.git

          • Stay Updated

            Subscribe to our newsletter for trending solutions and developer bootcamps

            Agree to Sign up and Terms & Conditions

            Share this Page

            share link