moana | Robust cell type classification of single-cell RNA | Genomics library
kandi X-RAY | moana Summary
kandi X-RAY | moana Summary
This repository contains a Python implementation of Moana (Multi-resolution transcriptOmic ANAlysis framework), a framework for defining and predicting cell types in single-cell RNA-Seq data (Wagner and Yanai, 2018).
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Top functions reviewed by kandi - BETA
- Plot genome components
- Sum the values along a given axis
- Return a list of ribosomal genes
- Get the list of Mitochondrial genes
- Plots the validation tne plot
- Apply smoothing
- Apply smoothing transformation
- Plot a heatmap
- Read a colorscale file
- Calculate marker genes from cell labels
- Generate a matplotlib plot for a given matrix
- Apply smoothing to ExpMatrix
- Get the annotation files for a given species
- Calculate the decision function
- Plots t - SNE
- Convert expression matrix to gene names
- Calculates the decision function values from the given matrix
- Validate the classifier with num_genes
- Given a matrix of expression values returns a list of alleles
- Calculates the number of components for a given matrix
- Predict the correlation matrix for each cluster
- Plots the gene loading plot
- Plots circular validation
- Generate classification plot
- Apply knn_smooth
- Performs validation on the validation matrix
moana Key Features
moana Examples and Code Snippets
Community Discussions
Trending Discussions on moana
QUESTION
I made a List with information of movies.
ANSWER
Answered 2021-Nov-26 at 08:17class MovieScreen extends StatefulWidget {
//add these two lines
final String photo;
// required this.photo is called a named parameter and you can add as many as you want
const MovieScreen({Key? key, required this.photo}) : super(key: key);
@override
_MovieScreenState createState() => _MovieScreenState();
}
QUESTION
I have a file that contains some information in the line. I just want to print the words after the last character ∑. How can I do this?
text:
...ANSWER
Answered 2021-Nov-26 at 20:03You can just use the index [-1] as follows:
QUESTION
What I want to make is a menu list for a cake shop, the menu have 3 categories and in each category have different menus.
So I already have a nested RecyclerView in place, my problem is when I want to connect the RecyclerView with the database. I can make the Volley for the parent RecyclerView easily in the fragment, but its hard to make the StringRequest method for the child RecyclerView because I must set it in parent RecyclerView's adapter.
UPDATE
I narrowed down my problem, I already know how to make method inside the parent's adapter. Now I have another problem with the child RecyclerView StringRequest.
According to the tutorial that I see here, to populate each category with different menus I must do it like this :
...ANSWER
Answered 2021-Nov-22 at 07:53After a week of headache, finally I find a way to do it
The key to my solution is using one StringRequest to populate both parent and child adapter. First, what I did is get both of the parent and child's data using one php file, This is how I did it :
QUESTION
I have a collection of "ofertas" in my DB and the data has this structure:
...ANSWER
Answered 2021-May-31 at 13:31STEP 1 - CREATING A QUERY
Your query is good. It will return the data that you need to create a requested chart. I tested it, and you will got as a response data in this format:
QUESTION
I have a dataset that has information like below:
...ANSWER
Answered 2021-Jan-10 at 00:49Try with
QUESTION
I have a 2D list which I have added several lines. Each line consists of a string and then 3 floats.
...ANSWER
Answered 2021-Jan-09 at 18:29what I want to do is simply want to ignore the string elements of the list
Array slicing is the perfect tool for this job.
In each of your lists the 0th element is a string
QUESTION
I have this nested list which contains duplicate entries:
...ANSWER
Answered 2020-Jul-10 at 16:00There is likely a more elegant / pythonic solution to this problem, but here's one possible route:
QUESTION
I am trying to return all documents that contain a string in the userName & documentName.
Data:
...ANSWER
Answered 2020-Jun-16 at 05:23What you are looking for is the infix search and you need to have ngram tokenizer with a search time analyzer to achieve that.
Complete example with your sample data
Index mapping and setting
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