TCGAbiolinks | TCGAbiolinks | Genomics library
kandi X-RAY | TCGAbiolinks Summary
kandi X-RAY | TCGAbiolinks Summary
TCGAbiolinks is able to access The National Cancer Institute (NCI) Genomic Data Commons (GDC) thorough its GDC Application Programming Interface (API) to search, download and prepare relevant data for analysis in R.
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Trending Discussions on TCGAbiolinks
QUESTION
I have a data frame from TCGAbiolinks and need to narrow it down to just unnormalized data. I tried writing some sort of for loop that will return the rows where the tags variable in subset.gbmexp includes "unnormalized" but can't seem to get the code right. Something along the lines of:
...ANSWER
Answered 2020-Jul-30 at 21:05Assuming you want to select rows 1, 2, 3 and 6, which contain the character string "unnormalized" in the tags column, you could do:
QUESTION
I noticed there is a bug in a function from a package I want to use. An issue has been made on github, but the creator hasn't adressed this yet, and I need the function as soon as possible.
Therefore I want to edit the code. Apparently this is possible by editing the source, repacking and installing the entire package, I can rewrite the function and reassign the namespace, but also possibly by just editing the function in the current session using trace()
.
I already found out I can do:
...ANSWER
Answered 2018-Mar-29 at 10:20I faced a similar problem once and solved it using assignInNamespace()
. I don't have your package installed so I cannot be sure this will work for you, but I think it should. You would proceed as follows:
Make the version of the function you want, as edited:
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