TCGAbiolinks | TCGAbiolinks | Genomics library

 by   BioinformaticsFMRP R Version: Current License: No License

kandi X-RAY | TCGAbiolinks Summary

kandi X-RAY | TCGAbiolinks Summary

TCGAbiolinks is a R library typically used in Artificial Intelligence, Genomics applications. TCGAbiolinks has no bugs, it has no vulnerabilities and it has low support. You can download it from GitHub.

TCGAbiolinks is able to access The National Cancer Institute (NCI) Genomic Data Commons (GDC) thorough its GDC Application Programming Interface (API) to search, download and prepare relevant data for analysis in R.
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              TCGAbiolinks has a low active ecosystem.
              It has 231 star(s) with 102 fork(s). There are 25 watchers for this library.
              OutlinedDot
              It had no major release in the last 6 months.
              There are 217 open issues and 337 have been closed. On average issues are closed in 579 days. There are no pull requests.
              It has a neutral sentiment in the developer community.
              The latest version of TCGAbiolinks is current.

            kandi-Quality Quality

              TCGAbiolinks has no bugs reported.

            kandi-Security Security

              TCGAbiolinks has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

            kandi-License License

              TCGAbiolinks does not have a standard license declared.
              Check the repository for any license declaration and review the terms closely.
              OutlinedDot
              Without a license, all rights are reserved, and you cannot use the library in your applications.

            kandi-Reuse Reuse

              TCGAbiolinks releases are not available. You will need to build from source code and install.
              Installation instructions are not available. Examples and code snippets are available.

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            TCGAbiolinks Key Features

            No Key Features are available at this moment for TCGAbiolinks.

            TCGAbiolinks Examples and Code Snippets

            No Code Snippets are available at this moment for TCGAbiolinks.

            Community Discussions

            QUESTION

            How do I extract rows from a data frame by identifying a character string in a single column?
            Asked 2020-Jul-30 at 21:05

            I have a data frame from TCGAbiolinks and need to narrow it down to just unnormalized data. I tried writing some sort of for loop that will return the rows where the tags variable in subset.gbmexp includes "unnormalized" but can't seem to get the code right. Something along the lines of:

            ...

            ANSWER

            Answered 2020-Jul-30 at 21:05

            Assuming you want to select rows 1, 2, 3 and 6, which contain the character string "unnormalized" in the tags column, you could do:

            Source https://stackoverflow.com/questions/63180531

            QUESTION

            Editing a function in R using trace?
            Asked 2018-Mar-30 at 10:17

            I noticed there is a bug in a function from a package I want to use. An issue has been made on github, but the creator hasn't adressed this yet, and I need the function as soon as possible.

            Therefore I want to edit the code. Apparently this is possible by editing the source, repacking and installing the entire package, I can rewrite the function and reassign the namespace, but also possibly by just editing the function in the current session using trace().

            I already found out I can do:

            ...

            ANSWER

            Answered 2018-Mar-29 at 10:20

            I faced a similar problem once and solved it using assignInNamespace(). I don't have your package installed so I cannot be sure this will work for you, but I think it should. You would proceed as follows:

            Make the version of the function you want, as edited:

            Source https://stackoverflow.com/questions/49552901

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install TCGAbiolinks

            You can download it from GitHub.

            Support

            TCGAbiolinks is able to access The National Cancer Institute (NCI) Genomic Data Commons (GDC) thorough its GDC Application Programming Interface (API) to search, download and prepare relevant data for analysis in R.
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          • HTTPS

            https://github.com/BioinformaticsFMRP/TCGAbiolinks.git

          • CLI

            gh repo clone BioinformaticsFMRP/TCGAbiolinks

          • sshUrl

            git@github.com:BioinformaticsFMRP/TCGAbiolinks.git

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