maftools | Visualize MAF files from TCGA or in-house studies | Genomics library

by PoisonAlien R Version: 0.9.30 License: MIT

X-Ray Key Features Code Snippets Community Discussions(2)Vulnerabilities Install Support

kandi X-RAY | maftools Summary

maftools is a R library typically used in Artificial Intelligence, Genomics applications. maftools has no bugs, it has no vulnerabilities, it has a Permissive License and it has low support. You can download it from GitHub.

maftools provides a comprehensive set of functions for processing MAF files and to perform most commonly used analyses in cancer genomics. See here for a detailed usage and a case study.

Support

Quality

Security

License

Reuse

Support

maftools has a low active ecosystem.

It has 356 star(s) with 202 fork(s). There are 21 watchers for this library.

It had no major release in the last 6 months.

There are 89 open issues and 724 have been closed. On average issues are closed in 22 days. There are 6 open pull requests and 0 closed requests.

It has a neutral sentiment in the developer community.

The latest version of maftools is 0.9.30

Quality

maftools has no bugs reported.

Security

maftools has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

License

maftools is licensed under the MIT License. This license is Permissive.

Permissive licenses have the least restrictions, and you can use them in most projects.

Reuse

maftools releases are not available. You will need to build from source code and install.

Installation instructions are not available. Examples and code snippets are available.

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maftools Key Features

No Key Features are available at this moment for maftools.

maftools Examples and Code Snippets

No Code Snippets are available at this moment for maftools.

Community Discussions

Trending Discussions on maftools

Saving .maf file as a table

subsetMaf() query argumet can't get Shiny reactive value from webpage input.

QUESTION

Saving .maf file as a table

Asked 2019-Dec-17 at 08:48

I am trying to save a .maf file as a table, but I always get the error below:

...

ANSWER

Answered 2019-Dec-16 at 15:56

The problem is, that the write.table function doesn't know how to deal with an object of class MAF.

However, you can access the underlying data like this:

Source https://stackoverflow.com/questions/59359879

QUESTION

subsetMaf() query argumet can't get Shiny reactive value from webpage input.

Asked 2018-Jan-10 at 10:29

I am doing some work to show a pic generated by maftools on web server, but it seems subsetMaf() "query" argument can't get a Shiny reactive value input from web server. Below is a simple test: subsetMaf() works well on console on R like below:

read data ...

ANSWER

Answered 2018-Jan-10 at 10:29

The problem in your code is query = as.expression("cancer_types %in% input$select").

You can solve this problem by replacing the above code with:

Source https://stackoverflow.com/questions/48089899

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install maftools

You can download it from GitHub.

Support

vcf2maf - for converting your VCF files to MAF. Ensembl Variant Effect Predictor VEP. ICGC Simple Somatic Mutation Format. CIViC - Clinical interpretation of variants in cancer. DGIdb - Information on drug-gene interactions and the druggable genome.

Find more information at: